Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 EBF1-201ENST00000313708 5250 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC011481.3-201ENST00000623895 5594 ntBASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 FSCN1P1-201ENST00000568912 1481 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 INE2-201ENST00000630399 1874 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 SYNRG-229ENST00000621136 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TSPY12P-201ENST00000421279 868 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 AC008040.2-201ENST00000461049 708 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 AC131281.2-201ENST00000520478 145 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 AF213884.3-201ENST00000563833 479 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 AC130371.2-201ENST00000619443 611 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TCAM1P-207ENST00000485295 1537 ntBASIC9.6□□□□□ -0.87
LINC00643Q86TS7 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TBL1X-206ENST00000424279 5451 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
LINC00643Q86TS7 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms