Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 CRB3P1-201ENST00000449338 276 ntBASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AC190387.1-201ENST00000551683 408 ntBASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AC093726.1-201ENST00000608064 963 ntBASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 FAM86LP-201ENST00000478302 853 ntBASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 AL513477.1-201ENST00000602865 2407 ntBASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.36□□□□□ -0.11
NUP54Q7Z3B4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CICP13-201ENST00000422015 2789 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms