Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC006453.1-201ENST00000636037 1257 ntBASIC20.04■□□□□ 0.8
USP54Q70EL1 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.04■□□□□ 0.8
USP54Q70EL1 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
USP54Q70EL1 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 MVK-214ENST00000629016 1591 ntTSL 5 BASIC20.04■□□□□ 0.8
USP54Q70EL1 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.04■□□□□ 0.8
USP54Q70EL1 REXO1L2P-201ENST00000425429 2069 ntBASIC20.04■□□□□ 0.8
USP54Q70EL1 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC20.04■□□□□ 0.8
USP54Q70EL1 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 C18orf15-201ENST00000623680 2534 ntBASIC20.04■□□□□ 0.8
USP54Q70EL1 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP54Q70EL1 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP54Q70EL1 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 CMC1-204ENST00000423894 549 ntTSL 2 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AC069218.1-201ENST00000435269 762 ntBASIC20.03■□□□□ 0.8
USP54Q70EL1 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AP003419.4-201ENST00000616071 517 ntBASIC20.03■□□□□ 0.8
USP54Q70EL1 DDX5-235ENST00000630471 473 ntTSL 4 BASIC20.03■□□□□ 0.8
USP54Q70EL1 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AC092978.1-202ENST00000637590 1327 ntBASIC20.03■□□□□ 0.8
USP54Q70EL1 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 IGF1-203ENST00000392904 761 ntTSL 5 BASIC20.03■□□□□ 0.8
USP54Q70EL1 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC20.03■□□□□ 0.8
USP54Q70EL1 RTN3P1-201ENST00000536295 711 ntBASIC20.03■□□□□ 0.8
USP54Q70EL1 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USP54Q70EL1 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC20.03■□□□□ 0.8
USP54Q70EL1 AC051619.9-201ENST00000623237 597 ntBASIC20.03■□□□□ 0.8
USP54Q70EL1 SNX1-214ENST00000625244 324 ntTSL 5 BASIC20.03■□□□□ 0.8
USP54Q70EL1 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC20.03■□□□□ 0.8
USP54Q70EL1 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP54Q70EL1 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC20.02■□□□□ 0.8
USP54Q70EL1 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
USP54Q70EL1 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC20.02■□□□□ 0.8
USP54Q70EL1 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
USP54Q70EL1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
USP54Q70EL1 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USP54Q70EL1 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC20.02■□□□□ 0.8
USP54Q70EL1 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
USP54Q70EL1 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 AC253536.4-201ENST00000440539 267 ntBASIC20.02■□□□□ 0.8
USP54Q70EL1 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC20.02■□□□□ 0.8
USP54Q70EL1 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC20.02■□□□□ 0.8
USP54Q70EL1 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC20.02■□□□□ 0.8
USP54Q70EL1 NAP1L6-202ENST00000641404 1222 ntBASIC20.02■□□□□ 0.8
USP54Q70EL1 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP54Q70EL1 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP54Q70EL1 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC20.02■□□□□ 0.79
USP54Q70EL1 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC20.02■□□□□ 0.79
USP54Q70EL1 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC20.01■□□□□ 0.79
USP54Q70EL1 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
USP54Q70EL1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC20.01■□□□□ 0.79
USP54Q70EL1 XBP1P1-201ENST00000436573 652 ntBASIC20.01■□□□□ 0.79
USP54Q70EL1 SKA2-202ENST00000437036 625 ntTSL 2 BASIC20.01■□□□□ 0.79
USP54Q70EL1 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC20.01■□□□□ 0.79
USP54Q70EL1 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC20.01■□□□□ 0.79
USP54Q70EL1 NPM1P43-201ENST00000558669 786 ntBASIC20.01■□□□□ 0.79
USP54Q70EL1 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC20.01■□□□□ 0.79
USP54Q70EL1 RN7SL555P-201ENST00000584742 339 ntBASIC20.01■□□□□ 0.79
USP54Q70EL1 CMC2-224ENST00000630396 481 ntTSL 5 BASIC20.01■□□□□ 0.79
USP54Q70EL1 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
USP54Q70EL1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms