Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 BX842568.4-201ENST00000421222 227 ntBASIC17.67■□□□□ 0.42
ATL3Q6DD88 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 AP006288.1-201ENST00000446065 395 ntBASIC17.67■□□□□ 0.42
ATL3Q6DD88 ZNF890P-202ENST00000530367 1156 ntBASIC17.67■□□□□ 0.42
ATL3Q6DD88 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 AC010336.2-201ENST00000564226 506 ntBASIC17.67■□□□□ 0.42
ATL3Q6DD88 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ATL3Q6DD88 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ATL3Q6DD88 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 RN7SL618P-201ENST00000477850 296 ntBASIC17.66■□□□□ 0.42
ATL3Q6DD88 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 AC051619.7-201ENST00000568314 623 ntBASIC17.66■□□□□ 0.42
ATL3Q6DD88 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATL3Q6DD88 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ATL3Q6DD88 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 AC018442.1-201ENST00000421439 2061 ntBASIC17.65■□□□□ 0.42
ATL3Q6DD88 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 CNN2P11-201ENST00000429351 262 ntBASIC17.65■□□□□ 0.42
ATL3Q6DD88 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.65■□□□□ 0.42
ATL3Q6DD88 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
ATL3Q6DD88 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATL3Q6DD88 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms