Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AL008638.5-201ENST00000623814 1298 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 AC024909.3-201ENST00000611513 2257 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
TFF3Q07654 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
TFF3Q07654 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 AHCYP2-201ENST00000430630 1300 ntBASIC13.62□□□□□ -0.23
TFF3Q07654 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
TFF3Q07654 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
TFF3Q07654 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.61□□□□□ -0.23
TFF3Q07654 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
TFF3Q07654 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 AC104306.2-201ENST00000451877 341 ntBASIC13.61□□□□□ -0.23
TFF3Q07654 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.61□□□□□ -0.23
TFF3Q07654 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 KRT18P25-201ENST00000508931 1278 ntBASIC13.61□□□□□ -0.23
TFF3Q07654 RNA5SP423-201ENST00000517127 109 ntBASIC13.61□□□□□ -0.23
TFF3Q07654 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.61□□□□□ -0.23
TFF3Q07654 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.61□□□□□ -0.23
TFF3Q07654 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.61□□□□□ -0.23
TFF3Q07654 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.61□□□□□ -0.23
TFF3Q07654 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.61□□□□□ -0.23
TFF3Q07654 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.61□□□□□ -0.23
TFF3Q07654 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.61□□□□□ -0.23
TFF3Q07654 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 AC005695.3-201ENST00000614522 232 ntBASIC13.61□□□□□ -0.23
TFF3Q07654 AC132938.4-201ENST00000623835 848 ntBASIC13.61□□□□□ -0.23
TFF3Q07654 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
TFF3Q07654 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
TFF3Q07654 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.61□□□□□ -0.23
TFF3Q07654 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
TFF3Q07654 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
TFF3Q07654 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
TFF3Q07654 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
TFF3Q07654 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
TFF3Q07654 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
TFF3Q07654 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
TFF3Q07654 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
TFF3Q07654 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
TFF3Q07654 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms