Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
LMO4P61968 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 SNX21-203ENST00000372541 771 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 AC007969.1-201ENST00000433675 447 ntBASIC12.61□□□□□ -0.39
LMO4P61968 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC12.61□□□□□ -0.39
LMO4P61968 MTX1P1-201ENST00000440904 838 ntBASIC12.61□□□□□ -0.39
LMO4P61968 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.61□□□□□ -0.39
LMO4P61968 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 AC104306.2-201ENST00000451877 341 ntBASIC12.61□□□□□ -0.39
LMO4P61968 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 RPSAP36-202ENST00000494591 1261 ntBASIC12.61□□□□□ -0.39
LMO4P61968 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
LMO4P61968 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC12.61□□□□□ -0.39
LMO4P61968 AP006547.1-201ENST00000563435 692 ntBASIC12.61□□□□□ -0.39
LMO4P61968 DUX4L47-201ENST00000566374 394 ntBASIC12.61□□□□□ -0.39
LMO4P61968 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 MIR3615-201ENST00000581999 87 ntBASIC12.61□□□□□ -0.39
LMO4P61968 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.61□□□□□ -0.39
LMO4P61968 AL022328.3-201ENST00000607943 679 ntBASIC12.61□□□□□ -0.39
LMO4P61968 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC12.61□□□□□ -0.39
LMO4P61968 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
LMO4P61968 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
LMO4P61968 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LMO4P61968 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 AC090616.6-203ENST00000579186 1945 ntBASIC12.6□□□□□ -0.39
LMO4P61968 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
LMO4P61968 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms