Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.02■□□□□ -0
FOXA1P55317 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.02■□□□□ -0
FOXA1P55317 SPDYE7P-202ENST00000420373 878 ntBASIC15.02■□□□□ -0
FOXA1P55317 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.02■□□□□ -0
FOXA1P55317 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.02■□□□□ -0
FOXA1P55317 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
FOXA1P55317 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
FOXA1P55317 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.02■□□□□ -0
FOXA1P55317 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.02■□□□□ -0
FOXA1P55317 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.02■□□□□ -0
FOXA1P55317 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
FOXA1P55317 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.02■□□□□ -0
FOXA1P55317 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.02■□□□□ -0
FOXA1P55317 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA1P55317 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA1P55317 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.02□□□□□ -0.01
FOXA1P55317 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
FOXA1P55317 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA1P55317 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA1P55317 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
FOXA1P55317 AC063926.3-201ENST00000624734 5658 ntBASIC15.01□□□□□ -0.01
FOXA1P55317 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 AC067930.6-201ENST00000623257 4947 ntBASIC15.01□□□□□ -0.01
FOXA1P55317 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA1P55317 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
FOXA1P55317 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
FOXA1P55317 FAM8A3P-201ENST00000427218 844 ntBASIC15.01□□□□□ -0.01
FOXA1P55317 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA1P55317 RPL13P2-201ENST00000440687 659 ntBASIC15.01□□□□□ -0.01
FOXA1P55317 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA1P55317 AL512361.1-201ENST00000554200 418 ntBASIC15.01□□□□□ -0.01
FOXA1P55317 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
FOXA1P55317 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 REXO1L4P-201ENST00000605109 1937 ntBASIC15.01□□□□□ -0.01
FOXA1P55317 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA1P55317 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
FOXA1P55317 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 MTHFR-210ENST00000641407 2387 ntBASIC15□□□□□ -0.01
FOXA1P55317 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15□□□□□ -0.01
FOXA1P55317 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 SLC9A7P1-202ENST00000556476 2239 ntBASIC15□□□□□ -0.01
FOXA1P55317 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms