Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MSH3P20585 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
MSH3P20585 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MSH3P20585 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
MSH3P20585 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 DFFBP1-201ENST00000433250 979 ntBASIC15.47■□□□□ 0.07
MSH3P20585 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.47■□□□□ 0.07
MSH3P20585 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.47■□□□□ 0.07
MSH3P20585 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
MSH3P20585 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.47■□□□□ 0.07
MSH3P20585 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MSH3P20585 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
MSH3P20585 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MSH3P20585 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSH3P20585 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.46■□□□□ 0.07
MSH3P20585 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
MSH3P20585 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
MSH3P20585 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 AC087499.6-201ENST00000411576 835 ntBASIC15.46■□□□□ 0.07
MSH3P20585 PIN1P1-201ENST00000412108 996 ntBASIC15.46■□□□□ 0.07
MSH3P20585 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
MSH3P20585 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.46■□□□□ 0.07
MSH3P20585 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.46■□□□□ 0.07
MSH3P20585 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.46■□□□□ 0.07
MSH3P20585 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.46■□□□□ 0.07
MSH3P20585 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.46■□□□□ 0.07
MSH3P20585 AC090616.6-203ENST00000579186 1945 ntBASIC15.46■□□□□ 0.07
MSH3P20585 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSH3P20585 AC006486.2-201ENST00000624246 2199 ntBASIC15.46■□□□□ 0.07
MSH3P20585 SLC7A15P-201ENST00000424028 1363 ntBASIC15.46■□□□□ 0.07
MSH3P20585 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.46■□□□□ 0.07
MSH3P20585 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
MSH3P20585 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
MSH3P20585 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
MSH3P20585 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.06
MSH3P20585 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.46■□□□□ 0.06
MSH3P20585 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MSH3P20585 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MSH3P20585 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
MSH3P20585 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.46■□□□□ 0.06
MSH3P20585 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
MSH3P20585 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms