Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.19■□□□□ 0.02
SIX3O95343 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.19■□□□□ 0.02
SIX3O95343 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.19■□□□□ 0.02
SIX3O95343 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
SIX3O95343 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 AC015910.1-201ENST00000579400 975 ntBASIC15.19■□□□□ 0.02
SIX3O95343 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 LINC01115-203ENST00000606068 577 ntBASIC15.19■□□□□ 0.02
SIX3O95343 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.19■□□□□ 0.02
SIX3O95343 SPDYE12P-201ENST00000618416 771 ntBASIC15.19■□□□□ 0.02
SIX3O95343 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 AP000845.1-201ENST00000581677 2131 ntBASIC15.19■□□□□ 0.02
SIX3O95343 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.19■□□□□ 0.02
SIX3O95343 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.19■□□□□ 0.02
SIX3O95343 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SIX3O95343 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 AL139400.1-201ENST00000366220 510 ntBASIC15.18■□□□□ 0.02
SIX3O95343 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.18■□□□□ 0.02
SIX3O95343 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SIX3O95343 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 AC004967.1-201ENST00000453589 447 ntBASIC15.18■□□□□ 0.02
SIX3O95343 SERBP1P3-201ENST00000459980 809 ntBASIC15.18■□□□□ 0.02
SIX3O95343 HLA-J-203ENST00000494367 1087 ntBASIC15.18■□□□□ 0.02
SIX3O95343 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.18■□□□□ 0.02
SIX3O95343 AL512361.1-201ENST00000554200 418 ntBASIC15.18■□□□□ 0.02
SIX3O95343 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 AL359258.3-201ENST00000622910 2331 ntBASIC15.18■□□□□ 0.02
SIX3O95343 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SIX3O95343 ACE3P-201ENST00000423435 1973 ntBASIC15.18■□□□□ 0.02
SIX3O95343 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SIX3O95343 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SIX3O95343 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SIX3O95343 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 PCDHA3-202ENST00000532566 4594 ntBASIC15.17■□□□□ 0.02
SIX3O95343 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms