Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 DGCR5-201ENST00000399539 862 ntBASIC18.69■□□□□ 0.58
SALL3Q9BXA9 AL139094.1-201ENST00000405549 1188 ntBASIC18.69■□□□□ 0.58
SALL3Q9BXA9 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.69■□□□□ 0.58
SALL3Q9BXA9 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AL137783.1-201ENST00000623494 1896 ntBASIC18.68■□□□□ 0.58
SALL3Q9BXA9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 TERF1P3-201ENST00000505638 1227 ntBASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC104596.2-201ENST00000512793 793 ntBASIC18.68■□□□□ 0.58
SALL3Q9BXA9 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 BX539320.1-201ENST00000623759 877 ntBASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC023090.2-201ENST00000625182 2110 ntBASIC18.68■□□□□ 0.58
SALL3Q9BXA9 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SALL3Q9BXA9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 SOCS2P1-201ENST00000417727 557 ntBASIC18.67■□□□□ 0.58
SALL3Q9BXA9 EIF3FP3-201ENST00000434851 1086 ntBASIC18.67■□□□□ 0.58
SALL3Q9BXA9 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SALL3Q9BXA9 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms