Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 MEP1AP4-201ENST00000423244 1087 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 RPL7P3-201ENST00000441388 714 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC009090.5-201ENST00000624886 2285 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 GPAA1P2-202ENST00000606848 1787 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC024267.1-201ENST00000582320 895 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PRORSD1P-202ENST00000563365 2154 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ADPRH-204ENST00000478399 4546 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AL359258.3-201ENST00000622910 2331 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 INE1-201ENST00000456273 945 ntBASIC4.84□□□□□ -1.63
SYNE1Q8NF91 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SYNE1Q8NF91 OR2I1P-210ENST00000642037 4691 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 AC093525.8-201ENST00000624099 1342 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 TP73-211ENST00000604074 4806 ntTSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 RN7SL399P-201ENST00000471648 279 ntBASIC4.84□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms