Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
SCN1BQ07699 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 AL359881.3-201ENST00000602640 1721 ntBASIC13.93□□□□□ -0.18
SCN1BQ07699 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 CICP17-201ENST00000418553 2377 ntBASIC13.93□□□□□ -0.18
SCN1BQ07699 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.93□□□□□ -0.18
SCN1BQ07699 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
SCN1BQ07699 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 PRSS29P-201ENST00000440800 595 ntBASIC13.93□□□□□ -0.18
SCN1BQ07699 VN2R19P-201ENST00000442399 1052 ntBASIC13.93□□□□□ -0.18
SCN1BQ07699 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.93□□□□□ -0.18
SCN1BQ07699 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 UNC93B6-202ENST00000528242 690 ntBASIC13.93□□□□□ -0.18
SCN1BQ07699 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.93□□□□□ -0.18
SCN1BQ07699 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
SCN1BQ07699 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 AC104692.2-201ENST00000603054 253 ntBASIC13.93□□□□□ -0.18
SCN1BQ07699 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.93□□□□□ -0.18
SCN1BQ07699 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.93□□□□□ -0.18
SCN1BQ07699 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.93□□□□□ -0.18
SCN1BQ07699 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SCN1BQ07699 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SCN1BQ07699 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SCN1BQ07699 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 ZBED1P1-201ENST00000502364 1930 ntBASIC13.92□□□□□ -0.18
SCN1BQ07699 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 HMGA1P7-201ENST00000406908 502 ntBASIC13.92□□□□□ -0.18
SCN1BQ07699 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 TPM4P1-201ENST00000436100 807 ntBASIC13.92□□□□□ -0.18
SCN1BQ07699 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 AC079776.4-201ENST00000511039 504 ntBASIC13.92□□□□□ -0.18
SCN1BQ07699 RNA5SP415-201ENST00000517246 115 ntBASIC13.92□□□□□ -0.18
SCN1BQ07699 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms