Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.13■□□□□ 0.49
RHBDL3P58872 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.13■□□□□ 0.49
RHBDL3P58872 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.13■□□□□ 0.49
RHBDL3P58872 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.13■□□□□ 0.49
RHBDL3P58872 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RHBDL3P58872 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.13■□□□□ 0.49
RHBDL3P58872 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.13■□□□□ 0.49
RHBDL3P58872 PPY2P-201ENST00000582808 702 ntBASIC18.13■□□□□ 0.49
RHBDL3P58872 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RHBDL3P58872 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RHBDL3P58872 AC138466.3-201ENST00000619983 221 ntBASIC18.13■□□□□ 0.49
RHBDL3P58872 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
RHBDL3P58872 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
RHBDL3P58872 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
RHBDL3P58872 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RHBDL3P58872 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RHBDL3P58872 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.12■□□□□ 0.49
RHBDL3P58872 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.12■□□□□ 0.49
RHBDL3P58872 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.12■□□□□ 0.49
RHBDL3P58872 CHMP1AP1-201ENST00000445563 662 ntBASIC18.12■□□□□ 0.49
RHBDL3P58872 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC18.12■□□□□ 0.49
RHBDL3P58872 MESTP3-201ENST00000503460 968 ntBASIC18.12■□□□□ 0.49
RHBDL3P58872 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.12■□□□□ 0.49
RHBDL3P58872 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 AL359258.3-201ENST00000622910 2331 ntBASIC18.12■□□□□ 0.49
RHBDL3P58872 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDL3P58872 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
RHBDL3P58872 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDL3P58872 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDL3P58872 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.11■□□□□ 0.49
RHBDL3P58872 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDL3P58872 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 BCYRN1-201ENST00000418539 200 ntBASIC18.11■□□□□ 0.49
RHBDL3P58872 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC18.11■□□□□ 0.49
RHBDL3P58872 OARD1-212ENST00000482515 832 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDL3P58872 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AP001258.2-201ENST00000529891 490 ntBASIC18.11■□□□□ 0.49
RHBDL3P58872 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.11■□□□□ 0.49
RHBDL3P58872 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC18.11■□□□□ 0.49
RHBDL3P58872 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDL3P58872 KC6-205ENST00000599934 556 ntTSL 4 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.11■□□□□ 0.49
RHBDL3P58872 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC020658.6-201ENST00000623564 1870 ntBASIC18.11■□□□□ 0.49
RHBDL3P58872 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RHBDL3P58872 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.11■□□□□ 0.49
RHBDL3P58872 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDL3P58872 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDL3P58872 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RHBDL3P58872 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDL3P58872 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDL3P58872 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.1■□□□□ 0.49
RHBDL3P58872 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDL3P58872 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDL3P58872 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms