Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
MSH6P52701 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH6P52701 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH6P52701 ALOX12P2-203ENST00000570921 1945 ntBASIC21.12■□□□□ 0.97
MSH6P52701 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
MSH6P52701 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC21.11■□□□□ 0.97
MSH6P52701 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH6P52701 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
MSH6P52701 PAM16-211ENST00000575848 518 ntTSL 3 BASIC21.11■□□□□ 0.97
MSH6P52701 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 AMT-204ENST00000427987 1646 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH6P52701 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 FAM90A2P-201ENST00000511144 1395 ntBASIC21.11■□□□□ 0.97
MSH6P52701 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH6P52701 FAM90A25P-201ENST00000528404 1395 ntBASIC21.11■□□□□ 0.97
MSH6P52701 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 HTR7P1-202ENST00000624664 4411 ntBASIC21.11■□□□□ 0.97
MSH6P52701 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
MSH6P52701 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
MSH6P52701 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH6P52701 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
MSH6P52701 AC239868.1-201ENST00000369385 493 ntBASIC21.1■□□□□ 0.97
MSH6P52701 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH6P52701 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC21.1■□□□□ 0.97
MSH6P52701 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH6P52701 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 SHC1P1-201ENST00000425230 1745 ntBASIC21.1■□□□□ 0.97
MSH6P52701 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH6P52701 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
MSH6P52701 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH6P52701 RN7SKP175-201ENST00000408472 289 ntBASIC21.1■□□□□ 0.97
MSH6P52701 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH6P52701 RPL8P2-201ENST00000430538 502 ntBASIC21.1■□□□□ 0.97
MSH6P52701 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC21.1■□□□□ 0.97
MSH6P52701 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC21.1■□□□□ 0.97
MSH6P52701 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 AL022344.2-201ENST00000568976 968 ntBASIC21.1■□□□□ 0.97
MSH6P52701 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
MSH6P52701 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
MSH6P52701 AC002472.3-201ENST00000640124 621 ntBASIC21.1■□□□□ 0.97
MSH6P52701 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH6P52701 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH6P52701 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH6P52701 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC21.09■□□□□ 0.97
MSH6P52701 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
MSH6P52701 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
MSH6P52701 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH6P52701 ME2P1-201ENST00000426028 1970 ntBASIC21.09■□□□□ 0.97
MSH6P52701 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms