Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.8□□□□□ -0.36
CDX1P47902 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.8□□□□□ -0.36
CDX1P47902 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12.8□□□□□ -0.36
CDX1P47902 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CDX1P47902 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.79□□□□□ -0.36
CDX1P47902 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 ALG1L8P-201ENST00000533887 760 ntBASIC12.79□□□□□ -0.36
CDX1P47902 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
CDX1P47902 AL138918.1-201ENST00000568306 659 ntBASIC12.79□□□□□ -0.36
CDX1P47902 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 AC136621.1-201ENST00000624017 2304 ntBASIC12.79□□□□□ -0.36
CDX1P47902 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 AL512652.2-201ENST00000625156 1716 ntBASIC12.79□□□□□ -0.36
CDX1P47902 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.79□□□□□ -0.36
CDX1P47902 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CDX1P47902 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.79□□□□□ -0.36
CDX1P47902 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
CDX1P47902 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.78□□□□□ -0.36
CDX1P47902 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.78□□□□□ -0.36
CDX1P47902 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.78□□□□□ -0.36
CDX1P47902 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.78□□□□□ -0.36
CDX1P47902 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 AC026150.2-201ENST00000564693 1156 ntBASIC12.78□□□□□ -0.36
CDX1P47902 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 AC106028.4-201ENST00000614509 607 ntBASIC12.78□□□□□ -0.36
CDX1P47902 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.78□□□□□ -0.36
CDX1P47902 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms