Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
RFC3P40938 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.27□□□□□ -0.13
RFC3P40938 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.27□□□□□ -0.13
RFC3P40938 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
RFC3P40938 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 LINC02447-202ENST00000501888 2146 ntBASIC14.27□□□□□ -0.13
RFC3P40938 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 INTS4P2-202ENST00000614726 2019 ntBASIC14.27□□□□□ -0.13
RFC3P40938 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RFC3P40938 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RFC3P40938 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 AC011477.6-201ENST00000604980 1927 ntBASIC14.26□□□□□ -0.13
RFC3P40938 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.26□□□□□ -0.13
RFC3P40938 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 AL442647.2-201ENST00000429864 857 ntBASIC14.26□□□□□ -0.13
RFC3P40938 AL162726.2-201ENST00000438986 1017 ntBASIC14.26□□□□□ -0.13
RFC3P40938 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.26□□□□□ -0.13
RFC3P40938 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.26□□□□□ -0.13
RFC3P40938 TDH-203ENST00000531764 1110 ntBASIC14.26□□□□□ -0.13
RFC3P40938 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.26□□□□□ -0.13
RFC3P40938 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 BRI3BPP1-201ENST00000594224 787 ntBASIC14.26□□□□□ -0.13
RFC3P40938 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.26□□□□□ -0.13
RFC3P40938 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 AC069224.1-201ENST00000566372 1715 ntBASIC14.26□□□□□ -0.13
RFC3P40938 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.26□□□□□ -0.13
RFC3P40938 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 FAM45BP-202ENST00000592932 1624 ntBASIC14.26□□□□□ -0.13
RFC3P40938 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFC3P40938 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RFC3P40938 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.25□□□□□ -0.13
RFC3P40938 CYP2T1P-202ENST00000641596 2535 ntBASIC14.25□□□□□ -0.13
RFC3P40938 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFC3P40938 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFC3P40938 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFC3P40938 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFC3P40938 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms