Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CNOT1-221ENST00000569924 493 ntTSL 24.01□□□□□ -1.771e-19■□□□□ 10.1
YBX3P16989 RPL37-205ENST00000509877 637 ntTSL 5 BASIC11.1□□□□□ -0.635e-18■□□□□ 10.1
YBX3P16989 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.59□□□□□ -1.195e-18■□□□□ 10.1
YBX3P16989 BZW2-210ENST00000438834 674 ntTSL 419.26■□□□□ 0.672e-6■□□□□ 10.1
YBX3P16989 BZW2-211ENST00000446596 859 ntTSL 314.6□□□□□ -0.072e-6■□□□□ 10.1
YBX3P16989 BZW2-206ENST00000432311 800 ntTSL 312.49□□□□□ -0.412e-6■□□□□ 10.1
YBX3P16989 BZW2-213ENST00000480517 2101 ntTSL 28.05□□□□□ -1.122e-6■□□□□ 10.1
YBX3P16989 BZW2-205ENST00000430000 617 ntTSL 46.83□□□□□ -1.322e-6■□□□□ 10.1
YBX3P16989 GINS2-202ENST00000595355 625 ntTSL 321.64■■□□□ 1.057e-7■□□□□ 10.1
YBX3P16989 STT3A-215ENST00000531599 973 ntTSL 310.79□□□□□ -0.686e-6■□□□□ 10.1
YBX3P16989 STT3A-202ENST00000524639 582 ntTSL 28.85□□□□□ -0.996e-6■□□□□ 10.1
YBX3P16989 STT3A-208ENST00000526726 582 ntTSL 36.53□□□□□ -1.369e-11■□□□□ 10.1
YBX3P16989 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC26.39■■□□□ 1.822e-6■□□□□ 10.1
YBX3P16989 YPEL3-206ENST00000565479 865 ntTSL 525.57■■□□□ 1.682e-6■□□□□ 10.1
YBX3P16989 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.512e-6■□□□□ 10.1
YBX3P16989 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.492e-6■□□□□ 10.1
YBX3P16989 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.78■■□□□ 1.42e-6■□□□□ 10.1
YBX3P16989 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.332e-6■□□□□ 10.1
YBX3P16989 EEF2-201ENST00000309311 3164 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.377e-66■□□□□ 10.1
YBX3P16989 NCAPD2-207ENST00000539084 4290 ntTSL 211.81□□□□□ -0.522e-8■□□□□ 10.1
YBX3P16989 NCAPD2-202ENST00000382457 2844 ntTSL 511.7□□□□□ -0.542e-8■□□□□ 10.1
YBX3P16989 FDFT1-220ENST00000531733 712 ntTSL 229.23■■■□□ 2.277e-54■□□□□ 10.1
YBX3P16989 FDFT1-217ENST00000530337 741 ntTSL 324.64■■□□□ 1.547e-54■□□□□ 10.1
YBX3P16989 FDFT1-219ENST00000531249 768 ntTSL 217.11■□□□□ 0.337e-54■□□□□ 10.1
YBX3P16989 FDFT1-221ENST00000532266 583 ntTSL 510.23□□□□□ -0.777e-54■□□□□ 10.1
YBX3P16989 COLGALT1-202ENST00000593832 2941 ntTSL 214.37□□□□□ -0.118e-10■□□□□ 10.1
YBX3P16989 PVT1-214ENST00000522875 922 ntTSL 5 BASIC8.05□□□□□ -1.122e-7■□□□□ 10.1
YBX3P16989 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.829e-10■□□□□ 10.1
YBX3P16989 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.49e-10■□□□□ 10.1
YBX3P16989 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.599e-10■□□□□ 10.1
YBX3P16989 PTTG1-204ENST00000519287 670 ntTSL 59.92□□□□□ -0.829e-10■□□□□ 10.1
YBX3P16989 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC8.84□□□□□ -0.991e-10■□□□□ 10.1
YBX3P16989 HNRNPK-207ENST00000472778 822 ntTSL 37.92□□□□□ -1.141e-10■□□□□ 10.1
YBX3P16989 HNRNPK-209ENST00000483135 900 ntTSL 27.92□□□□□ -1.141e-10■□□□□ 10.1
YBX3P16989 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.388e-8■□□□□ 10.1
YBX3P16989 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.478e-8■□□□□ 10.1
YBX3P16989 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.46■■□□□ 1.193e-6■□□□□ 10.1
YBX3P16989 STRBP-203ENST00000407982 2751 ntTSL 1 (best)21.56■■□□□ 1.043e-6■□□□□ 10.1
YBX3P16989 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.73e-6■□□□□ 10.1
YBX3P16989 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.383e-6■□□□□ 10.1
YBX3P16989 ANXA5-205ENST00000509648 1083 ntTSL 26.15□□□□□ -1.423e-9■□□□□ 10.1
YBX3P16989 STIP1-208ENST00000540501 880 ntTSL 331.46■■■□□ 2.632e-8■□□□□ 10.1
YBX3P16989 ACTB-208ENST00000464611 715 ntTSL 59.5□□□□□ -0.893e-56■□□□□ 10.1
YBX3P16989 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.161e-6■□□□□ 10.1
YBX3P16989 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.871e-6■□□□□ 10.1
YBX3P16989 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.05■■□□□ 1.766e-13■□□□□ 10.1
YBX3P16989 H2AFX-201ENST00000375167 1373 ntTSL 225.85■■□□□ 1.736e-13■□□□□ 10.1
YBX3P16989 CTSC-204ENST00000527018 733 ntTSL 514.61□□□□□ -0.072e-7■□□□□ 10.1
YBX3P16989 CTSC-201ENST00000227266 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.252e-7■□□□□ 10.1
YBX3P16989 ATP5I-203ENST00000506525 496 ntTSL 1 (best)17.56■□□□□ 0.42e-13■□□□□ 10.1
YBX3P16989 ATP5I-204ENST00000515116 247 ntTSL 27.19□□□□□ -1.262e-13■□□□□ 10.1
YBX3P16989 YIF1A-207ENST00000484814 541 ntTSL 329.55■■■□□ 2.324e-6■□□□□ 10.1
YBX3P16989 YIF1A-212ENST00000528575 532 ntTSL 325.02■■□□□ 1.64e-6■□□□□ 10.1
YBX3P16989 YIF1A-204ENST00000431556 619 ntTSL 220.37■□□□□ 0.854e-6■□□□□ 10.1
YBX3P16989 PIGS-209ENST00000577620 608 ntTSL 414.77□□□□□ -0.059e-9■□□□□ 10.1
YBX3P16989 VARS-219ENST00000461328 662 ntTSL 320.38■□□□□ 0.852e-8■□□□□ 10.1
YBX3P16989 VARS-223ENST00000474643 885 ntTSL 520.29■□□□□ 0.842e-8■□□□□ 10.1
YBX3P16989 LMAN1-203ENST00000587918 678 ntTSL 29.07□□□□□ -0.967e-11■□□□□ 10.1
YBX3P16989 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.313e-21■□□□□ 10.1
YBX3P16989 RPL26-206ENST00000582556 763 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.233e-21■□□□□ 10.1
YBX3P16989 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.973e-21■□□□□ 10.1
YBX3P16989 RPL26-213ENST00000585176 353 ntTSL 36.62□□□□□ -1.353e-21■□□□□ 10.1
YBX3P16989 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.383e-21■□□□□ 10.1
YBX3P16989 RPL26-205ENST00000582485 443 ntTSL 36.15□□□□□ -1.423e-21■□□□□ 10.1
YBX3P16989 RPL26-212ENST00000584906 561 ntTSL 34.83□□□□□ -1.643e-21■□□□□ 10.1
YBX3P16989 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.663e-21■□□□□ 10.1
YBX3P16989 PTBP1-206ENST00000585856 1217 ntTSL 236.51■■■■□ 3.442e-12■□□□□ 10.1
YBX3P16989 PTBP1-207ENST00000585932 1030 ntTSL 327.7■■■□□ 2.022e-12■□□□□ 10.1
YBX3P16989 LDHA-224ENST00000545467 570 ntTSL 210.92□□□□□ -0.662e-29■□□□□ 10.1
YBX3P16989 RPL18-215ENST00000552705 1081 ntTSL 216.63■□□□□ 0.257e-43■□□□□ 10.1
YBX3P16989 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.584e-10■□□□□ 10.1
YBX3P16989 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.94■■□□□ 1.584e-10■□□□□ 10.1
YBX3P16989 CITED2-204ENST00000618718 901 ntTSL 2 BASIC22.13■■□□□ 1.134e-10■□□□□ 10.1
YBX3P16989 TNIP1-212ENST00000521782 565 ntTSL 421.72■■□□□ 1.077e-8■□□□□ 10.1
YBX3P16989 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.91■□□□□ 0.947e-8■□□□□ 10.1
YBX3P16989 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.634e-10■□□□□ 10.1
YBX3P16989 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.457e-8■□□□□ 10.1
YBX3P16989 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.437e-8■□□□□ 10.1
YBX3P16989 PISD-202ENST00000382151 2669 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.327e-8■□□□□ 10.1
YBX3P16989 H2AFY-205ENST00000451949 1744 ntTSL 211.8□□□□□ -0.524e-10■□□□□ 10.1
YBX3P16989 H2AFY-216ENST00000511494 2521 ntTSL 210.6□□□□□ -0.714e-10■□□□□ 10.1
YBX3P16989 YBX3-209ENST00000540747 548 ntTSL 510.35□□□□□ -0.752e-6■□□□□ 10.1
YBX3P16989 AC025423.2-201ENST00000537570 439 ntBASIC9.74□□□□□ -0.857e-8■□□□□ 10.1
YBX3P16989 SERPINB1-203ENST00000468511 449 ntTSL 38.97□□□□□ -0.977e-8■□□□□ 10.1
YBX3P16989 POT1-219ENST00000610141 405 ntTSL 26.96□□□□□ -1.37e-8■□□□□ 10.1
YBX3P16989 CNOT10-214ENST00000476967 354 ntTSL 24.75□□□□□ -1.653e-13■□□□□ 10.1
YBX3P16989 ACBD3-202ENST00000464927 294 ntTSL 23.48□□□□□ -1.857e-8■□□□□ 10.1
YBX3P16989 PVT1-211ENST00000521600 408 ntTSL 25.47□□□□□ -1.532e-7■□□□□ 10.1
YBX3P16989 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.521e-6■□□□□ 10.1
YBX3P16989 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.491e-6■□□□□ 10.1
YBX3P16989 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.18■□□□□ 0.181e-6■□□□□ 10.1
YBX3P16989 LAP3-202ENST00000503467 1709 ntTSL 211.15□□□□□ -0.621e-6■□□□□ 10.1
YBX3P16989 LAP3-209ENST00000513105 626 ntTSL 39.83□□□□□ -0.841e-6■□□□□ 10.1
YBX3P16989 LAP3-203ENST00000504614 813 ntTSL 36.46□□□□□ -1.381e-6■□□□□ 10.1
YBX3P16989 ECI2-209ENST00000489086 558 ntTSL 218.25■□□□□ 0.512e-8■□□□□ 10.1
YBX3P16989 ECI2-210ENST00000495548 814 ntTSL 517.29■□□□□ 0.362e-8■□□□□ 10.1
YBX3P16989 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.331e-6■□□□□ 10.1
YBX3P16989 AL355987.4-202ENST00000459985 1900 ntTSL 226.11■■□□□ 1.771e-6■□□□□ 10.1
YBX3P16989 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.22■□□□□ 0.511e-6■□□□□ 10.1
YBX3P16989 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC16.31■□□□□ 0.21e-6■□□□□ 10.1
Retrieved 100 of 29,075 protein–RNA pairs in 290.3 ms