Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.4■□□□□ 0.22
RTN3O95197 AC010491.1-201ENST00000563101 2797 ntBASIC16.4■□□□□ 0.22
RTN3O95197 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RTN3O95197 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.4■□□□□ 0.22
RTN3O95197 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.4■□□□□ 0.22
RTN3O95197 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.4■□□□□ 0.22
RTN3O95197 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RTN3O95197 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTN3O95197 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RTN3O95197 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.39■□□□□ 0.21
RTN3O95197 AC124283.3-201ENST00000570869 594 ntBASIC16.39■□□□□ 0.21
RTN3O95197 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.39■□□□□ 0.21
RTN3O95197 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.39■□□□□ 0.21
RTN3O95197 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 AC015936.2-201ENST00000593177 259 ntBASIC16.39■□□□□ 0.21
RTN3O95197 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 CU634019.7-201ENST00000624153 1185 ntBASIC16.39■□□□□ 0.21
RTN3O95197 FP236241.2-201ENST00000624906 1185 ntBASIC16.39■□□□□ 0.21
RTN3O95197 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RTN3O95197 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RTN3O95197 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTN3O95197 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
RTN3O95197 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.38■□□□□ 0.21
RTN3O95197 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RTN3O95197 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RTN3O95197 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
RTN3O95197 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.38■□□□□ 0.21
RTN3O95197 C1QBPP1-201ENST00000400117 770 ntBASIC16.38■□□□□ 0.21
RTN3O95197 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.38■□□□□ 0.21
RTN3O95197 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.38■□□□□ 0.21
RTN3O95197 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.38■□□□□ 0.21
RTN3O95197 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.38■□□□□ 0.21
RTN3O95197 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.38■□□□□ 0.21
RTN3O95197 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RTN3O95197 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.38■□□□□ 0.21
RTN3O95197 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.38■□□□□ 0.21
RTN3O95197 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.38■□□□□ 0.21
RTN3O95197 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RTN3O95197 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RTN3O95197 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RTN3O95197 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
RTN3O95197 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RTN3O95197 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms