Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.94□□□□□ -0.02
SEMA3DO95025 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SEMA3DO95025 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.94□□□□□ -0.02
SEMA3DO95025 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 TOMM22P5-201ENST00000416399 439 ntBASIC14.94□□□□□ -0.02
SEMA3DO95025 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
SEMA3DO95025 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.94□□□□□ -0.02
SEMA3DO95025 AC097493.3-201ENST00000509725 367 ntBASIC14.94□□□□□ -0.02
SEMA3DO95025 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.94□□□□□ -0.02
SEMA3DO95025 AC015910.1-201ENST00000579400 975 ntBASIC14.94□□□□□ -0.02
SEMA3DO95025 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.94□□□□□ -0.02
SEMA3DO95025 AC006538.3-201ENST00000612495 578 ntBASIC14.94□□□□□ -0.02
SEMA3DO95025 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 CICP4-201ENST00000447359 2812 ntBASIC14.94□□□□□ -0.02
SEMA3DO95025 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SEMA3DO95025 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SEMA3DO95025 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.94□□□□□ -0.02
SEMA3DO95025 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.93□□□□□ -0.02
SEMA3DO95025 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
SEMA3DO95025 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 AC100757.3-201ENST00000622361 1406 ntBASIC14.93□□□□□ -0.02
SEMA3DO95025 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.93□□□□□ -0.02
SEMA3DO95025 TREML5P-201ENST00000421694 576 ntBASIC14.93□□□□□ -0.02
SEMA3DO95025 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.93□□□□□ -0.02
SEMA3DO95025 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SEMA3DO95025 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.93□□□□□ -0.02
SEMA3DO95025 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.93□□□□□ -0.02
SEMA3DO95025 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.93□□□□□ -0.02
SEMA3DO95025 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.93□□□□□ -0.02
SEMA3DO95025 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SEMA3DO95025 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
SEMA3DO95025 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SEMA3DO95025 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms