Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CICP20-201ENST00000443330 2801 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ACE3P-201ENST00000423435 1973 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 FAM8A3P-201ENST00000427218 844 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 KRT18P31-201ENST00000506277 1292 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AC002347.1-201ENST00000569543 541 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AC008667.4-201ENST00000607370 168 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 NPAP1P7-201ENST00000613027 823 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 HSPA7-201ENST00000445535 1927 ntBASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 AC005252.3-201ENST00000623855 2258 ntBASIC11.41□□□□□ -0.58
SMKR1H3BMG3 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 MRPL20P1-201ENST00000400819 433 ntBASIC11.41□□□□□ -0.58
SMKR1H3BMG3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
SMKR1H3BMG3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms