Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.33■■■□□ 2.13
RPAP1Q9BWH6 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC28.33■■■□□ 2.13
RPAP1Q9BWH6 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 AC138932.3-201ENST00000567634 1902 ntBASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RPAP1Q9BWH6 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RPAP1Q9BWH6 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RPAP1Q9BWH6 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RPAP1Q9BWH6 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RPAP1Q9BWH6 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RPAP1Q9BWH6 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC28.3■■■□□ 2.12
RPAP1Q9BWH6 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.3■■■□□ 2.12
RPAP1Q9BWH6 SLC6A10P-202ENST00000431994 2058 ntBASIC28.29■■■□□ 2.12
RPAP1Q9BWH6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RPAP1Q9BWH6 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC28.29■■■□□ 2.12
RPAP1Q9BWH6 AC131281.2-201ENST00000520478 145 ntBASIC28.29■■■□□ 2.12
RPAP1Q9BWH6 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC28.29■■■□□ 2.12
RPAP1Q9BWH6 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.28■■■□□ 2.12
RPAP1Q9BWH6 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC28.28■■■□□ 2.12
RPAP1Q9BWH6 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RPAP1Q9BWH6 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
RPAP1Q9BWH6 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RPAP1Q9BWH6 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RPAP1Q9BWH6 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
RPAP1Q9BWH6 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RPAP1Q9BWH6 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RPAP1Q9BWH6 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
RPAP1Q9BWH6 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
RPAP1Q9BWH6 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.12
RPAP1Q9BWH6 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.26■■■□□ 2.12
RPAP1Q9BWH6 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RPAP1Q9BWH6 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RPAP1Q9BWH6 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.11
RPAP1Q9BWH6 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RPAP1Q9BWH6 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RPAP1Q9BWH6 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 FOXO3B-201ENST00000395675 1928 ntBASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC28.25■■■□□ 2.11
RPAP1Q9BWH6 SENP5-202ENST00000419026 973 ntTSL 3 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 AL117332.1-201ENST00000622628 974 ntBASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 GAK-223ENST00000628912 497 ntTSL 5 BASIC28.24■■■□□ 2.11
RPAP1Q9BWH6 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RPAP1Q9BWH6 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RPAP1Q9BWH6 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RPAP1Q9BWH6 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.23■■■□□ 2.11
RPAP1Q9BWH6 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC28.23■■■□□ 2.11
RPAP1Q9BWH6 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 MIR638-201ENST00000385237 100 ntBASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.22■■■□□ 2.11
RPAP1Q9BWH6 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RPAP1Q9BWH6 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC28.21■■■□□ 2.11
RPAP1Q9BWH6 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RPAP1Q9BWH6 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC28.21■■■□□ 2.11
RPAP1Q9BWH6 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC28.21■■■□□ 2.11
RPAP1Q9BWH6 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RPAP1Q9BWH6 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
RPAP1Q9BWH6 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RPAP1Q9BWH6 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RPAP1Q9BWH6 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC28.2■■■□□ 2.1
RPAP1Q9BWH6 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RPAP1Q9BWH6 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 MTDHP2-201ENST00000601468 714 ntBASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 MIR6724-1-201ENST00000616420 92 ntBASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 MIR6724-2-201ENST00000616483 92 ntBASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 MIR6724-4-201ENST00000617390 92 ntBASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 MIR6724-3-201ENST00000622482 92 ntBASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms