Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX3Q99909 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.27■□□□□ 0.68
SSX3Q99909 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.27■□□□□ 0.68
SSX3Q99909 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
SSX3Q99909 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SSX3Q99909 DUSP8P4-201ENST00000399538 1761 ntBASIC19.27■□□□□ 0.67
SSX3Q99909 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX3Q99909 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SSX3Q99909 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX3Q99909 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX3Q99909 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX3Q99909 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX3Q99909 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.26■□□□□ 0.67
SSX3Q99909 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SSX3Q99909 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX3Q99909 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.26■□□□□ 0.67
SSX3Q99909 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SSX3Q99909 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SSX3Q99909 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.25■□□□□ 0.67
SSX3Q99909 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.25■□□□□ 0.67
SSX3Q99909 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.25■□□□□ 0.67
SSX3Q99909 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SSX3Q99909 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SSX3Q99909 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.25■□□□□ 0.67
SSX3Q99909 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SSX3Q99909 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SSX3Q99909 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SSX3Q99909 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SSX3Q99909 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SSX3Q99909 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SSX3Q99909 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.24■□□□□ 0.67
SSX3Q99909 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SSX3Q99909 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.24■□□□□ 0.67
SSX3Q99909 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.24■□□□□ 0.67
SSX3Q99909 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.24■□□□□ 0.67
SSX3Q99909 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SSX3Q99909 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SSX3Q99909 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
SSX3Q99909 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SSX3Q99909 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SSX3Q99909 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SSX3Q99909 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.23■□□□□ 0.67
SSX3Q99909 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SSX3Q99909 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SSX3Q99909 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SSX3Q99909 AL451085.2-201ENST00000605085 799 ntBASIC19.23■□□□□ 0.67
SSX3Q99909 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.23■□□□□ 0.67
SSX3Q99909 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.23■□□□□ 0.67
SSX3Q99909 ERN1-208ENST00000606895 2068 ntBASIC19.23■□□□□ 0.67
SSX3Q99909 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SSX3Q99909 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX3Q99909 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX3Q99909 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SSX3Q99909 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.21■□□□□ 0.67
SSX3Q99909 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX3Q99909 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.21■□□□□ 0.67
SSX3Q99909 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 AC103724.3-201ENST00000564481 992 ntBASIC19.2■□□□□ 0.66
SSX3Q99909 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.2■□□□□ 0.66
SSX3Q99909 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX3Q99909 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX3Q99909 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSX3Q99909 AL031848.2-201ENST00000607670 837 ntBASIC19.19■□□□□ 0.66
SSX3Q99909 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.19■□□□□ 0.66
SSX3Q99909 AL035685.1-201ENST00000636663 812 ntBASIC19.19■□□□□ 0.66
SSX3Q99909 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX3Q99909 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.19■□□□□ 0.66
SSX3Q99909 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX3Q99909 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SSX3Q99909 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SSX3Q99909 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SSX3Q99909 AC092803.2-201ENST00000564287 1899 ntBASIC19.18■□□□□ 0.66
SSX3Q99909 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SSX3Q99909 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 AC022616.5-201ENST00000518796 181 ntBASIC19.18■□□□□ 0.66
SSX3Q99909 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SSX3Q99909 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SSX3Q99909 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX3Q99909 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX3Q99909 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
SSX3Q99909 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms