Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SPENQ96T58 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPENQ96T58 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPENQ96T58 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPENQ96T58 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPENQ96T58 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.22■□□□□ 0.99
SPENQ96T58 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.21■□□□□ 0.99
SPENQ96T58 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPENQ96T58 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
SPENQ96T58 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SPENQ96T58 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPENQ96T58 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPENQ96T58 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SPENQ96T58 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPENQ96T58 AC091305.1-201ENST00000479476 895 ntBASIC21.19■□□□□ 0.98
SPENQ96T58 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.19■□□□□ 0.98
SPENQ96T58 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.18■□□□□ 0.98
SPENQ96T58 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 AL136162.1-201ENST00000607711 1078 ntBASIC21.18■□□□□ 0.98
SPENQ96T58 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.18■□□□□ 0.98
SPENQ96T58 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPENQ96T58 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SPENQ96T58 AF213884.3-201ENST00000563833 479 ntBASIC21.17■□□□□ 0.98
SPENQ96T58 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SPENQ96T58 RASA4CP-201ENST00000424092 1398 ntBASIC21.17■□□□□ 0.98
SPENQ96T58 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.17■□□□□ 0.98
SPENQ96T58 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.17■□□□□ 0.98
SPENQ96T58 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.17■□□□□ 0.98
SPENQ96T58 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SPENQ96T58 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SPENQ96T58 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SPENQ96T58 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SPENQ96T58 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SPENQ96T58 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SPENQ96T58 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SPENQ96T58 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SPENQ96T58 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.16■□□□□ 0.98
SPENQ96T58 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.16■□□□□ 0.98
SPENQ96T58 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPENQ96T58 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.15■□□□□ 0.98
SPENQ96T58 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPENQ96T58 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPENQ96T58 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.15■□□□□ 0.98
SPENQ96T58 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.15■□□□□ 0.98
SPENQ96T58 SYT6-210ENST00000641643 1587 ntBASIC21.15■□□□□ 0.98
SPENQ96T58 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SPENQ96T58 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SPENQ96T58 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.14■□□□□ 0.97
SPENQ96T58 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.14■□□□□ 0.97
SPENQ96T58 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SPENQ96T58 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SPENQ96T58 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.14■□□□□ 0.97
SPENQ96T58 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SPENQ96T58 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.13■□□□□ 0.97
SPENQ96T58 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SPENQ96T58 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SPENQ96T58 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SPENQ96T58 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SPENQ96T58 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SPENQ96T58 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SPENQ96T58 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SPENQ96T58 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.12■□□□□ 0.97
SPENQ96T58 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.12■□□□□ 0.97
SPENQ96T58 SRD5A1P1-201ENST00000442297 786 ntBASIC21.11■□□□□ 0.97
SPENQ96T58 AC092437.1-201ENST00000624794 1048 ntBASIC21.11■□□□□ 0.97
SPENQ96T58 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SPENQ96T58 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SPENQ96T58 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SPENQ96T58 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SPENQ96T58 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.11■□□□□ 0.97
SPENQ96T58 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.11■□□□□ 0.97
SPENQ96T58 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPENQ96T58 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPENQ96T58 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPENQ96T58 MIR4767-201ENST00000582827 78 ntBASIC21.11■□□□□ 0.97
SPENQ96T58 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPENQ96T58 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
SPENQ96T58 AC090877.2-201ENST00000558441 1738 ntBASIC21.1■□□□□ 0.97
SPENQ96T58 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.1■□□□□ 0.97
SPENQ96T58 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SPENQ96T58 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.1■□□□□ 0.97
SPENQ96T58 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SPENQ96T58 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SPENQ96T58 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SPENQ96T58 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SPENQ96T58 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SPENQ96T58 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SPENQ96T58 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.09■□□□□ 0.97
SPENQ96T58 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms