Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
DEPDC4Q8N2C3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
DEPDC4Q8N2C3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
DEPDC4Q8N2C3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 AC007029.1-201ENST00000604183 313 ntBASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.41■■□□□ 1.02
DEPDC4Q8N2C3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 U85056.1-201ENST00000616429 682 ntBASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
DEPDC4Q8N2C3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
DEPDC4Q8N2C3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.39■■□□□ 1.01
DEPDC4Q8N2C3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.39■■□□□ 1.01
DEPDC4Q8N2C3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
DEPDC4Q8N2C3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 MIR6089-201ENST00000616698 64 ntBASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DEPDC4Q8N2C3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DEPDC4Q8N2C3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 ABCB10P4-201ENST00000566803 2184 ntBASIC21.36■■□□□ 1.01
DEPDC4Q8N2C3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 MIR3960-201ENST00000583311 91 ntBASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DEPDC4Q8N2C3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 RP9P-202ENST00000450133 1212 ntBASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 AC133552.2-201ENST00000619106 1032 ntBASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DEPDC4Q8N2C3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 AC025884.2-201ENST00000553429 711 ntBASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
DEPDC4Q8N2C3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
DEPDC4Q8N2C3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
DEPDC4Q8N2C3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
DEPDC4Q8N2C3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.33■■□□□ 1
DEPDC4Q8N2C3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms