Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.14■■□□□ 1.62
VPS52Q8N1B4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
VPS52Q8N1B4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
VPS52Q8N1B4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
VPS52Q8N1B4 AC092803.2-201ENST00000564287 1899 ntBASIC25.13■■□□□ 1.61
VPS52Q8N1B4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
VPS52Q8N1B4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
VPS52Q8N1B4 AC110285.6-201ENST00000617652 491 ntBASIC25.13■■□□□ 1.61
VPS52Q8N1B4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
VPS52Q8N1B4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
VPS52Q8N1B4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
VPS52Q8N1B4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
VPS52Q8N1B4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.12■■□□□ 1.61
VPS52Q8N1B4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
VPS52Q8N1B4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 AC096631.2-201ENST00000436136 790 ntBASIC25.1■■□□□ 1.61
VPS52Q8N1B4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
VPS52Q8N1B4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.09■■□□□ 1.61
VPS52Q8N1B4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.09■■□□□ 1.61
VPS52Q8N1B4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.09■■□□□ 1.61
VPS52Q8N1B4 AL512631.2-201ENST00000604634 923 ntBASIC25.09■■□□□ 1.61
VPS52Q8N1B4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
VPS52Q8N1B4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
VPS52Q8N1B4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
VPS52Q8N1B4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.08■■□□□ 1.61
VPS52Q8N1B4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.08■■□□□ 1.61
VPS52Q8N1B4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.08■■□□□ 1.61
VPS52Q8N1B4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
VPS52Q8N1B4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
VPS52Q8N1B4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.07■■□□□ 1.6
VPS52Q8N1B4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
VPS52Q8N1B4 DUSP8P4-201ENST00000399538 1761 ntBASIC25.07■■□□□ 1.6
VPS52Q8N1B4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
VPS52Q8N1B4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.07■■□□□ 1.6
VPS52Q8N1B4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.06■■□□□ 1.6
VPS52Q8N1B4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
VPS52Q8N1B4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
VPS52Q8N1B4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
VPS52Q8N1B4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS52Q8N1B4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS52Q8N1B4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS52Q8N1B4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS52Q8N1B4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
VPS52Q8N1B4 AC005837.3-201ENST00000612163 286 ntBASIC25.05■■□□□ 1.6
VPS52Q8N1B4 AC090877.2-201ENST00000558441 1738 ntBASIC25.05■■□□□ 1.6
VPS52Q8N1B4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.05■■□□□ 1.6
VPS52Q8N1B4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.04■■□□□ 1.6
VPS52Q8N1B4 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.04■■□□□ 1.6
VPS52Q8N1B4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS52Q8N1B4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS52Q8N1B4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
VPS52Q8N1B4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS52Q8N1B4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.04■■□□□ 1.6
VPS52Q8N1B4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
VPS52Q8N1B4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
VPS52Q8N1B4 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
VPS52Q8N1B4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.02■■□□□ 1.6
VPS52Q8N1B4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
VPS52Q8N1B4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.02■■□□□ 1.6
VPS52Q8N1B4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 SNX5-217ENST00000606557 1087 ntBASIC25.01■■□□□ 1.59
VPS52Q8N1B4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
VPS52Q8N1B4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
VPS52Q8N1B4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
VPS52Q8N1B4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25■■□□□ 1.59
VPS52Q8N1B4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS52Q8N1B4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms