Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.01■■□□□ 1.75
NKX3-2P78367 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
NKX3-2P78367 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26■■□□□ 1.75
NKX3-2P78367 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26■■□□□ 1.75
NKX3-2P78367 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26■■□□□ 1.75
NKX3-2P78367 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26■■□□□ 1.75
NKX3-2P78367 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC26■■□□□ 1.75
NKX3-2P78367 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26■■□□□ 1.75
NKX3-2P78367 DUX4L19-201ENST00000557448 1267 ntBASIC26■■□□□ 1.75
NKX3-2P78367 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
NKX3-2P78367 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX3-2P78367 ERN1-208ENST00000606895 2068 ntBASIC25.99■■□□□ 1.75
NKX3-2P78367 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX3-2P78367 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX3-2P78367 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX3-2P78367 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
NKX3-2P78367 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX3-2P78367 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX3-2P78367 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX3-2P78367 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
NKX3-2P78367 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX3-2P78367 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX3-2P78367 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX3-2P78367 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.98■■□□□ 1.75
NKX3-2P78367 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.98■■□□□ 1.75
NKX3-2P78367 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.98■■□□□ 1.75
NKX3-2P78367 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
NKX3-2P78367 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
NKX3-2P78367 AC005703.6-201ENST00000623265 1329 ntBASIC25.97■■□□□ 1.75
NKX3-2P78367 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX3-2P78367 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX3-2P78367 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.97■■□□□ 1.75
NKX3-2P78367 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.97■■□□□ 1.75
NKX3-2P78367 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX3-2P78367 AC010501.1-201ENST00000606270 1962 ntBASIC25.96■■□□□ 1.75
NKX3-2P78367 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX3-2P78367 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX3-2P78367 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX3-2P78367 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
NKX3-2P78367 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
NKX3-2P78367 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
NKX3-2P78367 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX3-2P78367 MIR939-201ENST00000401314 82 ntBASIC25.95■■□□□ 1.74
NKX3-2P78367 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX3-2P78367 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX3-2P78367 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.94■■□□□ 1.74
NKX3-2P78367 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.94■■□□□ 1.74
NKX3-2P78367 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.94■■□□□ 1.74
NKX3-2P78367 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX3-2P78367 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.94■■□□□ 1.74
NKX3-2P78367 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.94■■□□□ 1.74
NKX3-2P78367 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.94■■□□□ 1.74
NKX3-2P78367 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
NKX3-2P78367 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NKX3-2P78367 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NKX3-2P78367 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NKX3-2P78367 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX3-2P78367 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.92■■□□□ 1.74
NKX3-2P78367 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.92■■□□□ 1.74
NKX3-2P78367 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.92■■□□□ 1.74
NKX3-2P78367 LGR4-203ENST00000480977 492 ntTSL 2 BASIC25.92■■□□□ 1.74
NKX3-2P78367 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX3-2P78367 AP001330.3-201ENST00000520123 633 ntBASIC25.92■■□□□ 1.74
NKX3-2P78367 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NKX3-2P78367 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NKX3-2P78367 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NKX3-2P78367 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
NKX3-2P78367 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.91■■□□□ 1.74
NKX3-2P78367 AF213884.3-201ENST00000563833 479 ntBASIC25.91■■□□□ 1.74
NKX3-2P78367 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.91■■□□□ 1.74
NKX3-2P78367 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.91■■□□□ 1.74
NKX3-2P78367 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NKX3-2P78367 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
NKX3-2P78367 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NKX3-2P78367 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NKX3-2P78367 AC105265.2-201ENST00000467189 838 ntBASIC25.9■■□□□ 1.74
NKX3-2P78367 AC092666.2-201ENST00000613287 246 ntBASIC25.9■■□□□ 1.74
NKX3-2P78367 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.9■■□□□ 1.74
NKX3-2P78367 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX3-2P78367 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
NKX3-2P78367 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX3-2P78367 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.89■■□□□ 1.74
NKX3-2P78367 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NKX3-2P78367 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
NKX3-2P78367 AC092171.4-201ENST00000609130 632 ntBASIC25.89■■□□□ 1.74
NKX3-2P78367 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX3-2P78367 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX3-2P78367 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.74
NKX3-2P78367 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
NKX3-2P78367 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
NKX3-2P78367 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.88■■□□□ 1.73
NKX3-2P78367 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NKX3-2P78367 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
NKX3-2P78367 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms