Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC27.46■■□□□ 1.99
HMGB1P09429 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
HMGB1P09429 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.46■■□□□ 1.99
HMGB1P09429 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.46■■□□□ 1.99
HMGB1P09429 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.99
HMGB1P09429 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.45■■□□□ 1.99
HMGB1P09429 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC27.45■■□□□ 1.98
HMGB1P09429 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC27.45■■□□□ 1.98
HMGB1P09429 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
HMGB1P09429 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.45■■□□□ 1.98
HMGB1P09429 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.44■■□□□ 1.98
HMGB1P09429 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
HMGB1P09429 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
HMGB1P09429 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.44■■□□□ 1.98
HMGB1P09429 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.44■■□□□ 1.98
HMGB1P09429 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
HMGB1P09429 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
HMGB1P09429 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC27.43■■□□□ 1.98
HMGB1P09429 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC27.43■■□□□ 1.98
HMGB1P09429 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.43■■□□□ 1.98
HMGB1P09429 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGB1P09429 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
HMGB1P09429 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
HMGB1P09429 KRT18P24-201ENST00000344739 1156 ntBASIC27.42■■□□□ 1.98
HMGB1P09429 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
HMGB1P09429 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
HMGB1P09429 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
HMGB1P09429 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
HMGB1P09429 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
HMGB1P09429 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
HMGB1P09429 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
HMGB1P09429 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC27.41■■□□□ 1.98
HMGB1P09429 MIR4508-201ENST00000584178 70 ntBASIC27.41■■□□□ 1.98
HMGB1P09429 GAK-223ENST00000628912 497 ntTSL 5 BASIC27.41■■□□□ 1.98
HMGB1P09429 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC27.41■■□□□ 1.98
HMGB1P09429 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
HMGB1P09429 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
HMGB1P09429 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
HMGB1P09429 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
HMGB1P09429 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC27.4■■□□□ 1.98
HMGB1P09429 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
HMGB1P09429 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
HMGB1P09429 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
HMGB1P09429 AC004812.2-201ENST00000611079 2094 ntBASIC27.39■■□□□ 1.98
HMGB1P09429 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC27.39■■□□□ 1.98
HMGB1P09429 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27.39■■□□□ 1.98
HMGB1P09429 AC120024.1-201ENST00000562672 995 ntBASIC27.39■■□□□ 1.98
HMGB1P09429 AL161729.1-201ENST00000604104 1402 ntBASIC27.39■■□□□ 1.97
HMGB1P09429 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC27.38■■□□□ 1.97
HMGB1P09429 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.38■■□□□ 1.97
HMGB1P09429 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC27.38■■□□□ 1.97
HMGB1P09429 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.38■■□□□ 1.97
HMGB1P09429 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.38■■□□□ 1.97
HMGB1P09429 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGB1P09429 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
HMGB1P09429 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
HMGB1P09429 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
HMGB1P09429 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.37■■□□□ 1.97
HMGB1P09429 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC27.37■■□□□ 1.97
HMGB1P09429 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
HMGB1P09429 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 THRA-202ENST00000394121 2260 ntTSL 2 BASIC27.36■■□□□ 1.97
HMGB1P09429 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.36■■□□□ 1.97
HMGB1P09429 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
HMGB1P09429 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
HMGB1P09429 THA1P-201ENST00000590384 1145 ntBASIC27.36■■□□□ 1.97
HMGB1P09429 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC27.36■■□□□ 1.97
HMGB1P09429 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
HMGB1P09429 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGB1P09429 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.35■■□□□ 1.97
HMGB1P09429 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGB1P09429 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGB1P09429 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGB1P09429 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGB1P09429 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC27.35■■□□□ 1.97
HMGB1P09429 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC27.35■■□□□ 1.97
HMGB1P09429 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.35■■□□□ 1.97
HMGB1P09429 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
HMGB1P09429 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGB1P09429 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.35■■□□□ 1.97
HMGB1P09429 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms