Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
MSH5O43196 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC31.01■■■□□ 2.55
MSH5O43196 AC137630.3-201ENST00000607245 391 ntBASIC31.01■■■□□ 2.55
MSH5O43196 AC005837.3-201ENST00000612163 286 ntBASIC31.01■■■□□ 2.55
MSH5O43196 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
MSH5O43196 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
MSH5O43196 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
MSH5O43196 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31■■■□□ 2.55
MSH5O43196 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
MSH5O43196 AC110285.6-201ENST00000617652 491 ntBASIC31■■■□□ 2.55
MSH5O43196 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
MSH5O43196 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.99■■■□□ 2.55
MSH5O43196 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
MSH5O43196 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.99■■■□□ 2.55
MSH5O43196 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
MSH5O43196 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
MSH5O43196 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
MSH5O43196 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH5O43196 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH5O43196 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
MSH5O43196 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
MSH5O43196 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH5O43196 AC021242.3-201ENST00000607598 1377 ntBASIC30.98■■■□□ 2.55
MSH5O43196 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH5O43196 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
MSH5O43196 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.98■■■□□ 2.55
MSH5O43196 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC30.98■■■□□ 2.55
MSH5O43196 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC30.98■■■□□ 2.55
MSH5O43196 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
MSH5O43196 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
MSH5O43196 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.97■■■□□ 2.55
MSH5O43196 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.96■■■□□ 2.55
MSH5O43196 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
MSH5O43196 AC092028.1-203ENST00000608262 953 ntBASIC30.96■■■□□ 2.55
MSH5O43196 AC092666.2-201ENST00000613287 246 ntBASIC30.96■■■□□ 2.55
MSH5O43196 AL589935.2-201ENST00000616471 1231 ntBASIC30.96■■■□□ 2.55
MSH5O43196 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH5O43196 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH5O43196 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MSH5O43196 CLDN5-201ENST00000403084 2357 ntBASIC30.95■■■□□ 2.55
MSH5O43196 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
MSH5O43196 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC30.95■■■□□ 2.55
MSH5O43196 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.95■■■□□ 2.55
MSH5O43196 AC096631.2-201ENST00000436136 790 ntBASIC30.95■■■□□ 2.55
MSH5O43196 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
MSH5O43196 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.95■■■□□ 2.55
MSH5O43196 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC30.95■■■□□ 2.54
MSH5O43196 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.54
MSH5O43196 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.54
MSH5O43196 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.94■■■□□ 2.54
MSH5O43196 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.94■■■□□ 2.54
MSH5O43196 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
MSH5O43196 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.94■■■□□ 2.54
MSH5O43196 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
MSH5O43196 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.94■■■□□ 2.54
MSH5O43196 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
MSH5O43196 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
MSH5O43196 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC30.93■■■□□ 2.54
MSH5O43196 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
MSH5O43196 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH5O43196 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC30.92■■■□□ 2.54
MSH5O43196 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.92■■■□□ 2.54
MSH5O43196 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.92■■■□□ 2.54
MSH5O43196 AC120024.1-201ENST00000562672 995 ntBASIC30.92■■■□□ 2.54
MSH5O43196 ERN1-208ENST00000606895 2068 ntBASIC30.92■■■□□ 2.54
MSH5O43196 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC30.92■■■□□ 2.54
MSH5O43196 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
MSH5O43196 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
MSH5O43196 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
MSH5O43196 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
MSH5O43196 AP003400.6-201ENST00000624698 740 ntBASIC30.91■■■□□ 2.54
MSH5O43196 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MSH5O43196 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.9■■■□□ 2.54
MSH5O43196 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
MSH5O43196 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
MSH5O43196 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
MSH5O43196 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.89■■■□□ 2.54
MSH5O43196 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.89■■■□□ 2.54
MSH5O43196 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.89■■■□□ 2.54
MSH5O43196 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.89■■■□□ 2.54
MSH5O43196 AL117332.1-201ENST00000622628 974 ntBASIC30.89■■■□□ 2.54
MSH5O43196 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
MSH5O43196 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
MSH5O43196 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
MSH5O43196 DUSP8P4-201ENST00000399538 1761 ntBASIC30.88■■■□□ 2.53
MSH5O43196 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
MSH5O43196 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.87■■■□□ 2.53
MSH5O43196 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
MSH5O43196 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.87■■■□□ 2.53
MSH5O43196 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.87■■■□□ 2.53
MSH5O43196 AC022726.2-201ENST00000634673 547 ntBASIC30.87■■■□□ 2.53
MSH5O43196 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
MSH5O43196 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
MSH5O43196 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
MSH5O43196 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
MSH5O43196 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
MSH5O43196 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH5O43196 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH5O43196 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
MSH5O43196 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms