Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC40.98■■■■■ 4.15
CCDC88BA6NC98 SRD5A1P1-201ENST00000442297 786 ntBASIC40.98■■■■■ 4.15
CCDC88BA6NC98 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC40.98■■■■■ 4.15
CCDC88BA6NC98 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC40.97■■■■■ 4.15
CCDC88BA6NC98 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC40.97■■■■■ 4.15
CCDC88BA6NC98 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC40.97■■■■■ 4.15
CCDC88BA6NC98 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC40.97■■■■■ 4.15
CCDC88BA6NC98 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC40.97■■■■■ 4.15
CCDC88BA6NC98 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC40.96■■■■■ 4.15
CCDC88BA6NC98 LGR4-203ENST00000480977 492 ntTSL 2 BASIC40.96■■■■■ 4.15
CCDC88BA6NC98 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC40.96■■■■■ 4.15
CCDC88BA6NC98 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC40.96■■■■■ 4.15
CCDC88BA6NC98 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC40.95■■■■■ 4.15
CCDC88BA6NC98 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC40.94■■■■■ 4.14
CCDC88BA6NC98 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC40.94■■■■■ 4.14
CCDC88BA6NC98 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC40.94■■■■■ 4.14
CCDC88BA6NC98 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC40.93■■■■■ 4.14
CCDC88BA6NC98 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
CCDC88BA6NC98 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC40.92■■■■■ 4.14
CCDC88BA6NC98 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
CCDC88BA6NC98 AP001330.3-201ENST00000520123 633 ntBASIC40.92■■■■■ 4.14
CCDC88BA6NC98 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC40.92■■■■■ 4.14
CCDC88BA6NC98 MIR939-201ENST00000401314 82 ntBASIC40.91■■■■■ 4.14
CCDC88BA6NC98 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC40.91■■■■■ 4.14
CCDC88BA6NC98 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC40.91■■■■■ 4.14
CCDC88BA6NC98 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC40.91■■■■■ 4.14
CCDC88BA6NC98 AC010501.1-201ENST00000606270 1962 ntBASIC40.91■■■■■ 4.14
CCDC88BA6NC98 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC40.9■■■■■ 4.14
CCDC88BA6NC98 AC105265.2-201ENST00000467189 838 ntBASIC40.9■■■■■ 4.14
CCDC88BA6NC98 AL355001.2-201ENST00000620617 1191 ntBASIC40.9■■■■■ 4.14
CCDC88BA6NC98 AL136967.2-201ENST00000623968 743 ntBASIC40.9■■■■■ 4.14
CCDC88BA6NC98 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC40.9■■■■■ 4.14
CCDC88BA6NC98 AF213884.3-201ENST00000563833 479 ntBASIC40.9■■■■■ 4.14
CCDC88BA6NC98 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC40.9■■■■■ 4.14
CCDC88BA6NC98 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC40.89■■■■■ 4.14
CCDC88BA6NC98 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC40.89■■■■■ 4.14
CCDC88BA6NC98 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC40.89■■■■■ 4.14
CCDC88BA6NC98 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC40.88■■■■■ 4.14
CCDC88BA6NC98 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC40.88■■■■■ 4.14
CCDC88BA6NC98 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC40.88■■■■■ 4.13
CCDC88BA6NC98 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC40.88■■■■■ 4.13
CCDC88BA6NC98 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC40.88■■■■■ 4.13
CCDC88BA6NC98 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC40.87■■■■■ 4.13
CCDC88BA6NC98 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC40.86■■■■■ 4.13
CCDC88BA6NC98 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
CCDC88BA6NC98 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC40.85■■■■■ 4.13
CCDC88BA6NC98 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC40.85■■■■■ 4.13
CCDC88BA6NC98 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC40.85■■■■■ 4.13
CCDC88BA6NC98 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC40.85■■■■■ 4.13
CCDC88BA6NC98 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC40.84■■■■■ 4.13
CCDC88BA6NC98 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC40.84■■■■■ 4.13
CCDC88BA6NC98 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC40.84■■■■■ 4.13
CCDC88BA6NC98 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC40.84■■■■■ 4.13
CCDC88BA6NC98 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC40.83■■■■■ 4.13
CCDC88BA6NC98 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC40.83■■■■■ 4.13
CCDC88BA6NC98 AC131274.2-201ENST00000580697 1507 ntBASIC40.83■■■■■ 4.13
CCDC88BA6NC98 GRAMD4P4-201ENST00000613563 1115 ntBASIC40.83■■■■■ 4.13
CCDC88BA6NC98 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC40.83■■■■■ 4.13
CCDC88BA6NC98 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC40.82■■■■■ 4.13
CCDC88BA6NC98 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC40.82■■■■■ 4.13
CCDC88BA6NC98 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC40.82■■■■■ 4.12
CCDC88BA6NC98 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC40.82■■■■■ 4.12
CCDC88BA6NC98 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC40.82■■■■■ 4.12
CCDC88BA6NC98 AC092666.2-201ENST00000613287 246 ntBASIC40.82■■■■■ 4.12
CCDC88BA6NC98 SF1-220ENST00000626028 704 ntTSL 2 BASIC40.82■■■■■ 4.12
CCDC88BA6NC98 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC40.82■■■■■ 4.12
CCDC88BA6NC98 PKM-203ENST00000389093 2279 ntTSL 5 BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC40.81■■■■■ 4.12
CCDC88BA6NC98 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC40.8■■■■■ 4.12
CCDC88BA6NC98 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC40.79■■■■■ 4.12
CCDC88BA6NC98 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC40.78■■■■■ 4.12
CCDC88BA6NC98 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC40.77■■■■■ 4.12
CCDC88BA6NC98 HYI-206ENST00000372434 1025 ntTSL 5 BASIC40.77■■■■■ 4.12
CCDC88BA6NC98 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC40.77■■■■■ 4.12
CCDC88BA6NC98 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC40.77■■■■■ 4.12
CCDC88BA6NC98 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC40.77■■■■■ 4.12
CCDC88BA6NC98 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC40.77■■■■■ 4.12
CCDC88BA6NC98 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC40.76■■■■■ 4.12
CCDC88BA6NC98 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC40.75■■■■■ 4.11
CCDC88BA6NC98 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC40.75■■■■■ 4.11
CCDC88BA6NC98 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
CCDC88BA6NC98 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC40.75■■■■■ 4.11
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms