Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
KCNIP3Q9Y2W7 AC018892.3-201ENST00000623986 2499 ntBASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.08□□□□□ -0.31
KCNIP3Q9Y2W7 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC092474.2-201ENST00000424288 719 ntBASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 PRSS29P-201ENST00000440800 595 ntBASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC105339.3-201ENST00000560043 636 ntBASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC091304.2-201ENST00000564639 760 ntBASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.08□□□□□ -0.32
KCNIP3Q9Y2W7 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
KCNIP3Q9Y2W7 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms