Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 HLA-K-203ENST00000430151 1046 ntBASIC20.72■□□□□ 0.91
NPHP3Q7Z494 VDAC1P1-201ENST00000439229 848 ntBASIC20.72■□□□□ 0.91
NPHP3Q7Z494 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 CTBP2P4-201ENST00000513884 920 ntBASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 DUX4L46-201ENST00000566845 751 ntBASIC20.72■□□□□ 0.91
NPHP3Q7Z494 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP3Q7Z494 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 PAM16-211ENST00000575848 518 ntTSL 3 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP3Q7Z494 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
NPHP3Q7Z494 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
NPHP3Q7Z494 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 FLJ38576-201ENST00000623820 2459 ntBASIC20.7■□□□□ 0.9
NPHP3Q7Z494 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 DNM1P30-201ENST00000563586 452 ntBASIC20.7■□□□□ 0.9
NPHP3Q7Z494 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 NAT9-211ENST00000580632 799 ntTSL 3 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 AC103810.10-201ENST00000606504 343 ntBASIC20.7■□□□□ 0.9
NPHP3Q7Z494 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 E2F3P2-201ENST00000447755 1422 ntBASIC20.7■□□□□ 0.9
NPHP3Q7Z494 AC080080.1-201ENST00000625121 2420 ntBASIC20.7■□□□□ 0.9
NPHP3Q7Z494 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP3Q7Z494 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms