Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
YBX1P67809 AC092337.1-201ENST00000568699 1129 ntBASIC15.16■□□□□ 0.02
YBX1P67809 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 AC007191.1-201ENST00000623179 2995 ntBASIC15.16■□□□□ 0.02
YBX1P67809 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 AC139749.1-202ENST00000617529 3139 ntBASIC15.16■□□□□ 0.02
YBX1P67809 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
YBX1P67809 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
YBX1P67809 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
YBX1P67809 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
YBX1P67809 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 AL359258.3-201ENST00000622910 2331 ntBASIC15.15■□□□□ 0.02
YBX1P67809 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.15■□□□□ 0.02
YBX1P67809 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
YBX1P67809 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 DOC2GP-202ENST00000514950 1163 ntBASIC15.15■□□□□ 0.02
YBX1P67809 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.15■□□□□ 0.02
YBX1P67809 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.15■□□□□ 0.02
YBX1P67809 AC092364.2-202ENST00000597012 1073 ntBASIC15.15■□□□□ 0.02
YBX1P67809 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.15■□□□□ 0.02
YBX1P67809 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.15■□□□□ 0.02
YBX1P67809 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.15■□□□□ 0.02
YBX1P67809 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
YBX1P67809 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
YBX1P67809 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
YBX1P67809 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.14■□□□□ 0.01
YBX1P67809 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.14■□□□□ 0.01
YBX1P67809 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
YBX1P67809 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
YBX1P67809 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.14■□□□□ 0.01
YBX1P67809 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
YBX1P67809 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
YBX1P67809 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.14■□□□□ 0.01
YBX1P67809 AC015922.1-201ENST00000421102 1152 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms