Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.38■□□□□ 0.05
SRP54P61011 AC233724.13-201ENST00000598383 410 ntBASIC15.38■□□□□ 0.05
SRP54P61011 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.38■□□□□ 0.05
SRP54P61011 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.38■□□□□ 0.05
SRP54P61011 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 CYP2T1P-202ENST00000641596 2535 ntBASIC15.38■□□□□ 0.05
SRP54P61011 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
SRP54P61011 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
SRP54P61011 MIR658-201ENST00000385210 100 ntBASIC15.37■□□□□ 0.05
SRP54P61011 MIR1909-201ENST00000411312 80 ntBASIC15.37■□□□□ 0.05
SRP54P61011 KRT43P-201ENST00000434019 910 ntBASIC15.37■□□□□ 0.05
SRP54P61011 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.37■□□□□ 0.05
SRP54P61011 AC007274.1-201ENST00000439805 662 ntBASIC15.37■□□□□ 0.05
SRP54P61011 AC022210.1-201ENST00000449856 793 ntBASIC15.37■□□□□ 0.05
SRP54P61011 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.37■□□□□ 0.05
SRP54P61011 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.37■□□□□ 0.05
SRP54P61011 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.37■□□□□ 0.05
SRP54P61011 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.37■□□□□ 0.05
SRP54P61011 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.37■□□□□ 0.05
SRP54P61011 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
SRP54P61011 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
SRP54P61011 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SRP54P61011 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SRP54P61011 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 AC018665.1-201ENST00000622927 1362 ntBASIC15.36■□□□□ 0.05
SRP54P61011 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.36■□□□□ 0.05
SRP54P61011 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 CROCCP4-201ENST00000457096 498 ntBASIC15.36■□□□□ 0.05
SRP54P61011 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.36■□□□□ 0.05
SRP54P61011 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
SRP54P61011 PTP4A1P2-201ENST00000546033 454 ntBASIC15.36■□□□□ 0.05
SRP54P61011 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.36■□□□□ 0.05
SRP54P61011 AC015910.1-201ENST00000579400 975 ntBASIC15.36■□□□□ 0.05
SRP54P61011 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.36■□□□□ 0.05
SRP54P61011 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 AC132872.4-202ENST00000622924 2756 ntBASIC15.36■□□□□ 0.05
SRP54P61011 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms