Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 AC092127.1-201ENST00000567093 3455 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 AC004899.1-201ENST00000424687 1714 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 TMBIM7P-203ENST00000641617 1718 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
COL4A4P53420 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 CHMP1AP1-201ENST00000445563 662 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 AC019193.1-201ENST00000506678 823 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 AC135983.4-201ENST00000564116 1262 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 AL023803.2-201ENST00000620080 638 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
COL4A4P53420 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.23■□□□□ 0.19
COL4A4P53420 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL4A4P53420 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 AC114812.1-204ENST00000449669 728 ntBASIC16.23■□□□□ 0.19
COL4A4P53420 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 AC090164.2-201ENST00000611487 516 ntBASIC16.23■□□□□ 0.19
COL4A4P53420 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.23■□□□□ 0.19
COL4A4P53420 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.23■□□□□ 0.19
COL4A4P53420 CICP13-201ENST00000422015 2789 ntBASIC16.23■□□□□ 0.19
COL4A4P53420 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL4A4P53420 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A4P53420 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL4A4P53420 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.22■□□□□ 0.19
COL4A4P53420 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
COL4A4P53420 AC092850.2-201ENST00000623821 2697 ntBASIC16.22■□□□□ 0.19
COL4A4P53420 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.22■□□□□ 0.19
COL4A4P53420 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
COL4A4P53420 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL4A4P53420 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 RPL5P21-201ENST00000404620 815 ntBASIC16.22■□□□□ 0.19
COL4A4P53420 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.22■□□□□ 0.19
COL4A4P53420 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A4P53420 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 AC012044.1-201ENST00000603431 297 ntBASIC16.22■□□□□ 0.19
COL4A4P53420 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A4P53420 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.22■□□□□ 0.19
COL4A4P53420 PPT1-215ENST00000641471 2368 ntBASIC16.22■□□□□ 0.19
COL4A4P53420 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
COL4A4P53420 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
COL4A4P53420 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A4P53420 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A4P53420 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms