Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CXCL12P48061 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
CXCL12P48061 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.28■□□□□ 0.04
CXCL12P48061 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 AL353637.1-201ENST00000451571 732 ntBASIC15.28■□□□□ 0.04
CXCL12P48061 MARK2P5-201ENST00000507649 634 ntBASIC15.28■□□□□ 0.04
CXCL12P48061 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC15.28■□□□□ 0.04
CXCL12P48061 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.28■□□□□ 0.04
CXCL12P48061 SAMD11P1-201ENST00000571429 661 ntBASIC15.28■□□□□ 0.04
CXCL12P48061 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 AL353770.1-201ENST00000614915 403 ntBASIC15.28■□□□□ 0.04
CXCL12P48061 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CXCL12P48061 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CXCL12P48061 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.28■□□□□ 0.04
CXCL12P48061 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CXCL12P48061 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CXCL12P48061 AC012313.1-201ENST00000593393 3059 ntBASIC15.28■□□□□ 0.04
CXCL12P48061 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CXCL12P48061 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CXCL12P48061 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
CXCL12P48061 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.27■□□□□ 0.04
CXCL12P48061 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CXCL12P48061 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 GHSR-202ENST00000427970 912 ntBASIC15.27■□□□□ 0.04
CXCL12P48061 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.27■□□□□ 0.04
CXCL12P48061 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.27■□□□□ 0.04
CXCL12P48061 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.27■□□□□ 0.04
CXCL12P48061 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.27■□□□□ 0.04
CXCL12P48061 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 AC018635.2-201ENST00000608625 364 ntBASIC15.27■□□□□ 0.04
CXCL12P48061 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.27■□□□□ 0.04
CXCL12P48061 AF254983.2-201ENST00000612331 135 ntBASIC15.27■□□□□ 0.04
CXCL12P48061 AP003419.4-201ENST00000616071 517 ntBASIC15.27■□□□□ 0.04
CXCL12P48061 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CXCL12P48061 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CXCL12P48061 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CXCL12P48061 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.27■□□□□ 0.03
CXCL12P48061 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CXCL12P48061 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 FLJ38576-201ENST00000623820 2459 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms