Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 SPDYE7P-202ENST00000420373 878 ntBASIC12.81□□□□□ -0.36
CDX1P47902 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 CNN2P2-201ENST00000443536 909 ntBASIC12.81□□□□□ -0.36
CDX1P47902 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 FAM86GP-201ENST00000448322 971 ntBASIC12.81□□□□□ -0.36
CDX1P47902 CNN2P3-201ENST00000450201 906 ntBASIC12.81□□□□□ -0.36
CDX1P47902 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.81□□□□□ -0.36
CDX1P47902 HLA-J-202ENST00000469281 1241 ntBASIC12.81□□□□□ -0.36
CDX1P47902 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 CYMP-203ENST00000474680 1263 ntBASIC12.81□□□□□ -0.36
CDX1P47902 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.81□□□□□ -0.36
CDX1P47902 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC12.81□□□□□ -0.36
CDX1P47902 AL136317.3-201ENST00000618497 906 ntBASIC12.81□□□□□ -0.36
CDX1P47902 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.81□□□□□ -0.36
CDX1P47902 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 MYO15B-237ENST00000642007 4893 ntBASIC12.81□□□□□ -0.36
CDX1P47902 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC12.81□□□□□ -0.36
CDX1P47902 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CDX1P47902 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC12.81□□□□□ -0.36
CDX1P47902 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.8□□□□□ -0.36
CDX1P47902 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 REXO1L1P-202ENST00000608646 1974 ntBASIC12.8□□□□□ -0.36
CDX1P47902 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CDX1P47902 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 GPS2P2-201ENST00000430745 888 ntBASIC12.8□□□□□ -0.36
CDX1P47902 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 PRYP6-201ENST00000514804 343 ntBASIC12.8□□□□□ -0.36
CDX1P47902 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CDX1P47902 SLC25A39P2-201ENST00000537614 270 ntBASIC12.8□□□□□ -0.36
CDX1P47902 AC069262.1-201ENST00000539058 672 ntBASIC12.8□□□□□ -0.36
CDX1P47902 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.8□□□□□ -0.36
CDX1P47902 AL355385.1-201ENST00000606123 409 ntBASIC12.8□□□□□ -0.36
CDX1P47902 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.8□□□□□ -0.36
CDX1P47902 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CDX1P47902 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms