Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.15■□□□□ 0.02
HNF4AP41235 RN7SL618P-201ENST00000477850 296 ntBASIC15.15■□□□□ 0.02
HNF4AP41235 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.15■□□□□ 0.02
HNF4AP41235 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.15■□□□□ 0.02
HNF4AP41235 AL512361.1-201ENST00000554200 418 ntBASIC15.15■□□□□ 0.02
HNF4AP41235 AC005498.2-205ENST00000593218 784 ntBASIC15.15■□□□□ 0.02
HNF4AP41235 AL590560.3-201ENST00000623350 461 ntBASIC15.15■□□□□ 0.02
HNF4AP41235 AC126365.1-201ENST00000578585 1514 ntBASIC15.15■□□□□ 0.02
HNF4AP41235 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 KRT8P44-201ENST00000441609 1350 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
HNF4AP41235 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 AC241585.1-201ENST00000433527 519 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 AL512638.1-201ENST00000457493 794 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.14■□□□□ 0.01
HNF4AP41235 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.14■□□□□ 0.01
HNF4AP41235 SLED1-202ENST00000512051 380 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.14■□□□□ 0.01
HNF4AP41235 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.14■□□□□ 0.01
HNF4AP41235 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.14■□□□□ 0.01
HNF4AP41235 AC025048.3-201ENST00000590609 569 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 AC005702.4-201ENST00000618393 416 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.14■□□□□ 0.01
HNF4AP41235 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.14■□□□□ 0.01
HNF4AP41235 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HNF4AP41235 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.14■□□□□ 0.01
HNF4AP41235 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.14■□□□□ 0.01
HNF4AP41235 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HNF4AP41235 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.13■□□□□ 0.01
HNF4AP41235 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.13■□□□□ 0.01
HNF4AP41235 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.13■□□□□ 0.01
HNF4AP41235 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.13■□□□□ 0.01
HNF4AP41235 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.13■□□□□ 0.01
HNF4AP41235 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HNF4AP41235 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms