Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
COL6A3P12111 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A3P12111 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
COL6A3P12111 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 AC092580.1-201ENST00000433998 658 ntBASIC15.69■□□□□ 0.1
COL6A3P12111 AL451000.1-201ENST00000451300 1186 ntBASIC15.69■□□□□ 0.1
COL6A3P12111 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A3P12111 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A3P12111 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC15.69■□□□□ 0.1
COL6A3P12111 OR2A1-AS1-210ENST00000496968 531 ntBASIC15.69■□□□□ 0.1
COL6A3P12111 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A3P12111 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC15.69■□□□□ 0.1
COL6A3P12111 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL6A3P12111 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A3P12111 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A3P12111 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL6A3P12111 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A3P12111 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL6A3P12111 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL6A3P12111 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC15.68■□□□□ 0.1
COL6A3P12111 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
COL6A3P12111 AC005865.2-202ENST00000635814 725 ntBASIC15.68■□□□□ 0.1
COL6A3P12111 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A3P12111 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL6A3P12111 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A3P12111 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
COL6A3P12111 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
COL6A3P12111 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A3P12111 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A3P12111 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
COL6A3P12111 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.67■□□□□ 0.1
COL6A3P12111 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A3P12111 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A3P12111 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 AC011676.5-201ENST00000624864 2660 ntBASIC15.67■□□□□ 0.1
COL6A3P12111 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A3P12111 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms