Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A1P12109 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 AC116345.2-201ENST00000512837 523 ntBASIC16.96■□□□□ 0.31
COL6A1P12109 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A1P12109 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A1P12109 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
COL6A1P12109 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A1P12109 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
COL6A1P12109 AC242376.1-201ENST00000559033 726 ntBASIC16.96■□□□□ 0.31
COL6A1P12109 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A1P12109 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A1P12109 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A1P12109 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A1P12109 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 PRORSD1P-202ENST00000563365 2154 ntBASIC16.96■□□□□ 0.31
COL6A1P12109 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A1P12109 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A1P12109 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.96■□□□□ 0.3
COL6A1P12109 AC080080.1-201ENST00000625121 2420 ntBASIC16.96■□□□□ 0.3
COL6A1P12109 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
COL6A1P12109 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A1P12109 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.96■□□□□ 0.3
COL6A1P12109 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A1P12109 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
COL6A1P12109 AC092171.3-201ENST00000610122 2651 ntBASIC16.95■□□□□ 0.3
COL6A1P12109 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 AC007787.1-201ENST00000588095 1583 ntBASIC16.95■□□□□ 0.3
COL6A1P12109 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A1P12109 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.95■□□□□ 0.3
COL6A1P12109 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 AC135983.4-201ENST00000564116 1262 ntBASIC16.95■□□□□ 0.3
COL6A1P12109 AC012044.1-201ENST00000603431 297 ntBASIC16.95■□□□□ 0.3
COL6A1P12109 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
COL6A1P12109 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 PCDHA12-202ENST00000613593 2588 ntBASIC16.95■□□□□ 0.3
COL6A1P12109 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A1P12109 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
COL6A1P12109 AC022211.2-201ENST00000585075 2527 ntBASIC16.95■□□□□ 0.3
COL6A1P12109 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
COL6A1P12109 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A1P12109 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
COL6A1P12109 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A1P12109 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
COL6A1P12109 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
COL6A1P12109 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL6A1P12109 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A1P12109 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A1P12109 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A1P12109 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.94■□□□□ 0.3
COL6A1P12109 PUDPP3-201ENST00000445368 636 ntBASIC16.94■□□□□ 0.3
COL6A1P12109 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL6A1P12109 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A1P12109 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A1P12109 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.94■□□□□ 0.3
COL6A1P12109 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A1P12109 MIR4783-201ENST00000580343 82 ntBASIC16.94■□□□□ 0.3
COL6A1P12109 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms