Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.21■□□□□ 0.67
CACNA1FO60840 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CACNA1FO60840 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.21■□□□□ 0.67
CACNA1FO60840 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.21■□□□□ 0.67
CACNA1FO60840 AL359881.2-201ENST00000602973 570 ntBASIC19.21■□□□□ 0.67
CACNA1FO60840 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CACNA1FO60840 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CACNA1FO60840 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.2■□□□□ 0.66
CACNA1FO60840 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 ACE3P-201ENST00000423435 1973 ntBASIC19.2■□□□□ 0.66
CACNA1FO60840 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.2■□□□□ 0.66
CACNA1FO60840 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CACNA1FO60840 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CACNA1FO60840 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.19■□□□□ 0.66
CACNA1FO60840 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 HSPB1P2-201ENST00000448722 546 ntBASIC19.19■□□□□ 0.66
CACNA1FO60840 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.19■□□□□ 0.66
CACNA1FO60840 PPY2P-201ENST00000582808 702 ntBASIC19.19■□□□□ 0.66
CACNA1FO60840 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.19■□□□□ 0.66
CACNA1FO60840 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CACNA1FO60840 AL137783.1-201ENST00000623494 1896 ntBASIC19.19■□□□□ 0.66
CACNA1FO60840 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.19■□□□□ 0.66
CACNA1FO60840 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CACNA1FO60840 AC011840.2-201ENST00000563063 1520 ntBASIC19.19■□□□□ 0.66
CACNA1FO60840 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.19■□□□□ 0.66
CACNA1FO60840 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.19■□□□□ 0.66
CACNA1FO60840 GK-202ENST00000378941 458 ntTSL 3 BASIC19.19■□□□□ 0.66
CACNA1FO60840 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.19■□□□□ 0.66
CACNA1FO60840 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.19■□□□□ 0.66
CACNA1FO60840 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CACNA1FO60840 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC19.19■□□□□ 0.66
CACNA1FO60840 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CACNA1FO60840 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 MIR663B-201ENST00000408361 115 ntBASIC19.18■□□□□ 0.66
CACNA1FO60840 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.18■□□□□ 0.66
CACNA1FO60840 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 AL590440.2-201ENST00000641973 1595 ntBASIC19.18■□□□□ 0.66
CACNA1FO60840 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.18■□□□□ 0.66
CACNA1FO60840 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC19.18■□□□□ 0.66
CACNA1FO60840 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CACNA1FO60840 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.18■□□□□ 0.66
CACNA1FO60840 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CACNA1FO60840 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.18■□□□□ 0.66
CACNA1FO60840 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms