Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC3O15379 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.17■□□□□ 0.02
HDAC3O15379 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.17■□□□□ 0.02
HDAC3O15379 AC243562.1-201ENST00000560672 389 ntBASIC15.17■□□□□ 0.02
HDAC3O15379 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC3O15379 AC092865.6-201ENST00000642101 219 ntBASIC15.17■□□□□ 0.02
HDAC3O15379 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 AP000845.1-201ENST00000581677 2131 ntBASIC15.17■□□□□ 0.02
HDAC3O15379 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC3O15379 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.17■□□□□ 0.02
HDAC3O15379 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HDAC3O15379 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC3O15379 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
HDAC3O15379 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
HDAC3O15379 HLA-A-201ENST00000376802 1334 ntBASIC15.17■□□□□ 0.02
HDAC3O15379 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC3O15379 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC3O15379 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 BX640514.1-201ENST00000583223 1918 ntBASIC15.16■□□□□ 0.02
HDAC3O15379 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 CICP4-201ENST00000447359 2812 ntBASIC15.16■□□□□ 0.02
HDAC3O15379 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.16■□□□□ 0.02
HDAC3O15379 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HDAC3O15379 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.16■□□□□ 0.02
HDAC3O15379 KRT8P23-201ENST00000560090 1207 ntBASIC15.16■□□□□ 0.02
HDAC3O15379 LINC01225-203ENST00000563550 1244 ntBASIC15.16■□□□□ 0.02
HDAC3O15379 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.16■□□□□ 0.02
HDAC3O15379 AC091812.2-201ENST00000619081 385 ntBASIC15.16■□□□□ 0.02
HDAC3O15379 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC3O15379 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HDAC3O15379 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
HDAC3O15379 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.16■□□□□ 0.02
HDAC3O15379 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC3O15379 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC3O15379 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HDAC3O15379 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC3O15379 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
HDAC3O15379 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC3O15379 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HDAC3O15379 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HDAC3O15379 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms