Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.31□□□□□ -0.28
SDCBPO00560 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.31□□□□□ -0.28
SDCBPO00560 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.31□□□□□ -0.28
SDCBPO00560 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.31□□□□□ -0.28
SDCBPO00560 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.31□□□□□ -0.28
SDCBPO00560 AC079140.1-201ENST00000508039 487 ntBASIC13.31□□□□□ -0.28
SDCBPO00560 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.31□□□□□ -0.28
SDCBPO00560 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.31□□□□□ -0.28
SDCBPO00560 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.31□□□□□ -0.28
SDCBPO00560 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.31□□□□□ -0.28
SDCBPO00560 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.31□□□□□ -0.28
SDCBPO00560 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
SDCBPO00560 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.31□□□□□ -0.28
SDCBPO00560 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
SDCBPO00560 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SDCBPO00560 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SDCBPO00560 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SDCBPO00560 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 HTR5BP-201ENST00000430851 1154 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 ADH5P3-201ENST00000433842 1137 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 MKNK2P1-201ENST00000437526 628 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.3□□□□□ -0.28
SDCBPO00560 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 KRT8P48-201ENST00000515599 1220 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 AC243562.1-201ENST00000560672 389 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 AC243562.2-201ENST00000561247 970 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.3□□□□□ -0.28
SDCBPO00560 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 AC015656.1-201ENST00000624209 3578 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.3□□□□□ -0.28
SDCBPO00560 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SDCBPO00560 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.3□□□□□ -0.28
SDCBPO00560 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SDCBPO00560 AL691432.1-201ENST00000596308 1422 ntBASIC13.3□□□□□ -0.28
SDCBPO00560 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms