Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 AC012313.1-201ENST00000593393 3059 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 CCL25-202ENST00000315626 450 ntTSL 2 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 AC010141.1-201ENST00000411585 623 ntBASIC11.77□□□□□ -0.52
COL6A5A8TX70 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 AC012441.2-201ENST00000444843 739 ntBASIC11.77□□□□□ -0.52
COL6A5A8TX70 AC106047.2-201ENST00000511723 743 ntBASIC11.77□□□□□ -0.52
COL6A5A8TX70 TREHP1-201ENST00000531328 465 ntBASIC11.77□□□□□ -0.52
COL6A5A8TX70 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 MIR5001-201ENST00000580185 100 ntBASIC11.77□□□□□ -0.52
COL6A5A8TX70 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC11.77□□□□□ -0.52
COL6A5A8TX70 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
COL6A5A8TX70 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 MIR6746-201ENST00000620971 63 ntBASIC11.77□□□□□ -0.53
COL6A5A8TX70 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
COL6A5A8TX70 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
COL6A5A8TX70 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 AC244394.1-201ENST00000435000 1665 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 AC025183.3-201ENST00000623526 1482 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 EIF3FP3-201ENST00000434851 1086 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 DUTP3-201ENST00000450025 415 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 RN7SL494P-201ENST00000461517 304 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 AC063952.3-201ENST00000467756 308 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 AC093826.1-201ENST00000508655 993 ntBASIC11.76□□□□□ -0.53
COL6A5A8TX70 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
COL6A5A8TX70 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC11.76□□□□□ -0.53
COL6A5A8TX70 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms