Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.04□□□□□ -0.48
CCDC140Q96MF4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 DOC2GP-202ENST00000514950 1163 ntBASIC12.04□□□□□ -0.48
CCDC140Q96MF4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 NORAD-201ENST00000565493 5339 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 SPDYE19P-201ENST00000338590 713 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 TPRX2P-201ENST00000535362 881 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AC023310.3-201ENST00000557027 670 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AC100756.1-201ENST00000562736 682 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AC138749.3-201ENST00000567691 622 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AC116165.1-201ENST00000611806 668 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AJ011932.1-201ENST00000621707 465 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 AL596257.1-201ENST00000641463 2694 ntBASIC12.03□□□□□ -0.48
CCDC140Q96MF4 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CCDC140Q96MF4 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.02□□□□□ -0.48
CCDC140Q96MF4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms