Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AL139288.1-201ENST00000623748 933 ntBASIC12.14□□□□□ -0.47
CXCL1P09341 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
CXCL1P09341 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.14□□□□□ -0.47
CXCL1P09341 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.14□□□□□ -0.47
CXCL1P09341 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.14□□□□□ -0.47
CXCL1P09341 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.14□□□□□ -0.47
CXCL1P09341 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.14□□□□□ -0.47
CXCL1P09341 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CXCL1P09341 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CXCL1P09341 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
CXCL1P09341 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.13□□□□□ -0.47
CXCL1P09341 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 AP005117.1-201ENST00000584346 1413 ntBASIC12.13□□□□□ -0.47
CXCL1P09341 PID1-202ENST00000392054 2745 ntTSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.13□□□□□ -0.47
CXCL1P09341 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.13□□□□□ -0.47
CXCL1P09341 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 AC104819.1-201ENST00000504587 486 ntBASIC12.13□□□□□ -0.47
CXCL1P09341 PPOX-219ENST00000544598 813 ntTSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
CXCL1P09341 AC005412.3-201ENST00000580309 715 ntBASIC12.13□□□□□ -0.47
CXCL1P09341 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 CES1P1-201ENST00000421606 1704 ntBASIC12.13□□□□□ -0.47
CXCL1P09341 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CXCL1P09341 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 MED25-212ENST00000618715 1467 ntTSL 5 BASIC12.13□□□□□ -0.47
CXCL1P09341 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 AC007326.2-201ENST00000624224 7579 ntBASIC12.13□□□□□ -0.47
CXCL1P09341 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CXCL1P09341 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 AC005332.1-201ENST00000577698 1310 ntBASIC12.12□□□□□ -0.47
CXCL1P09341 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms