Protein–RNA interactions for Protein: Q9NQC3

RTN4, Reticulon-4, humanhuman

Known RBP Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4Q9NQC3 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC18.62■□□□□ 0.57
RTN4Q9NQC3 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 NSUN5P1-202ENST00000421140 1535 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 NSUN5P2-203ENST00000457352 1529 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 KRT18P1-202ENST00000452408 1331 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 IGHV3-47-201ENST00000425060 335 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 AP002383.4-201ENST00000442518 975 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 KRT17P6-201ENST00000453795 1220 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 AC239868.3-201ENST00000577853 1234 ntBASIC18.61■□□□□ 0.57
RTN4Q9NQC3 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.61■□□□□ 0.57
RTN4Q9NQC3 AC087481.3-201ENST00000602886 1894 ntBASIC18.6■□□□□ 0.57
RTN4Q9NQC3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 RBM26-AS1-202ENST00000606049 2427 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 TMPOP1-202ENST00000424642 1267 ntBASIC18.6■□□□□ 0.57
RTN4Q9NQC3 MTND4LP12-201ENST00000448237 295 ntBASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 MINOS1P3-201ENST00000457048 203 ntBASIC18.6■□□□□ 0.57
RTN4Q9NQC3 HLA-J-202ENST00000469281 1241 ntBASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 Z69720.1-201ENST00000601483 472 ntBASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTN4Q9NQC3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RTN4Q9NQC3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.59■□□□□ 0.57
RTN4Q9NQC3 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN4Q9NQC3 AC067750.1-201ENST00000608826 6545 ntBASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms