Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 AC027369.6-201ENST00000525520 931 ntBASIC16.12■□□□□ 0.17
PCDH9Q9HC56 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDH9Q9HC56 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 AL136379.1-201ENST00000623471 2642 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 FO393414.2-201ENST00000405153 598 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 HIST3H2BA-201ENST00000436555 524 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 AC097493.3-201ENST00000509725 367 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 TEX28P1-201ENST00000613479 1221 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 TEX28P2-201ENST00000617764 1221 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 AC084364.1-201ENST00000551967 1556 ntBASIC16.11■□□□□ 0.17
PCDH9Q9HC56 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDH9Q9HC56 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 AC092580.3-201ENST00000430932 139 ntBASIC16.1■□□□□ 0.17
PCDH9Q9HC56 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms