Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LRRC59-203ENST00000576448 1531 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 AGGF1P2-201ENST00000426656 2106 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 AC010141.1-201ENST00000411585 623 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.04■□□□□ -0
VPS13AQ96RL7 EIF3FP3-201ENST00000434851 1086 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 HLA-J-204ENST00000495278 958 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.04■□□□□ -0
VPS13AQ96RL7 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VPS13AQ96RL7 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.04■□□□□ -0
VPS13AQ96RL7 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.04■□□□□ -0
VPS13AQ96RL7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.04■□□□□ -0
VPS13AQ96RL7 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
VPS13AQ96RL7 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 HCG27-204ENST00000424675 895 ntTSL 3 BASIC15.04■□□□□ -0
VPS13AQ96RL7 SNORD3B-2-202ENST00000571722 791 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 AC138466.5-201ENST00000624002 808 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
VPS13AQ96RL7 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS13AQ96RL7 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.04■□□□□ -0
VPS13AQ96RL7 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VPS13AQ96RL7 LYPLA2P1-203ENST00000447689 696 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 AC026803.1-201ENST00000569130 274 ntBASIC15.04■□□□□ -0
VPS13AQ96RL7 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
VPS13AQ96RL7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 AC006449.5-201ENST00000610658 2098 ntBASIC15.03■□□□□ -0
VPS13AQ96RL7 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VPS13AQ96RL7 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VPS13AQ96RL7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.03■□□□□ -0
VPS13AQ96RL7 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VPS13AQ96RL7 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.03■□□□□ -0
VPS13AQ96RL7 AL627422.1-201ENST00000434104 580 ntBASIC15.03■□□□□ -0
VPS13AQ96RL7 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
VPS13AQ96RL7 POU5F1P2-201ENST00000521750 823 ntBASIC15.03■□□□□ -0
VPS13AQ96RL7 THY1-209ENST00000580275 578 ntTSL 3 BASIC15.03■□□□□ -0
VPS13AQ96RL7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC15.03■□□□□ -0
VPS13AQ96RL7 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.03■□□□□ -0
VPS13AQ96RL7 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC15.03■□□□□ -0
VPS13AQ96RL7 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 SERBP1P2-201ENST00000436888 1164 ntBASIC15.03■□□□□ -0
VPS13AQ96RL7 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 E2F3P2-201ENST00000447755 1422 ntBASIC15.03■□□□□ -0
VPS13AQ96RL7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13AQ96RL7 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.03■□□□□ -0
VPS13AQ96RL7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
VPS13AQ96RL7 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.02■□□□□ -0
VPS13AQ96RL7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 AC005041.3-201ENST00000606287 649 ntBASIC15.02■□□□□ -0
VPS13AQ96RL7 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.02■□□□□ -0
VPS13AQ96RL7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13AQ96RL7 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms