Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AC044860.1-202ENST00000559481 777 ntBASIC13.86□□□□□ -0.19
SKA3Q8IX90 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AL109936.8-201ENST00000641772 604 ntBASIC13.86□□□□□ -0.19
SKA3Q8IX90 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 Z97205.2-201ENST00000564697 1639 ntBASIC13.86□□□□□ -0.19
SKA3Q8IX90 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 AC074338.1-201ENST00000416825 156 ntBASIC13.85□□□□□ -0.19
SKA3Q8IX90 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 BASP1P1-201ENST00000430708 665 ntBASIC13.85□□□□□ -0.19
SKA3Q8IX90 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 AL512638.1-201ENST00000457493 794 ntBASIC13.85□□□□□ -0.19
SKA3Q8IX90 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 SDHAP3-202ENST00000515467 728 ntBASIC13.85□□□□□ -0.19
SKA3Q8IX90 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.85□□□□□ -0.19
SKA3Q8IX90 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SKA3Q8IX90 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms