Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC17.94■□□□□ 0.46
CTCFP49711 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CTCFP49711 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 AL132780.4-201ENST00000624870 1135 ntBASIC17.94■□□□□ 0.46
CTCFP49711 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.94■□□□□ 0.46
CTCFP49711 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.94■□□□□ 0.46
CTCFP49711 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CTCFP49711 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 AL627231.1-201ENST00000394467 1125 ntBASIC17.93■□□□□ 0.46
CTCFP49711 AL354877.1-201ENST00000424412 413 ntBASIC17.93■□□□□ 0.46
CTCFP49711 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC17.93■□□□□ 0.46
CTCFP49711 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CTCFP49711 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC17.93■□□□□ 0.46
CTCFP49711 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 RN7SL163P-201ENST00000583100 276 ntBASIC17.93■□□□□ 0.46
CTCFP49711 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.93■□□□□ 0.46
CTCFP49711 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.93■□□□□ 0.46
CTCFP49711 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CTCFP49711 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTCFP49711 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CTCFP49711 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.92■□□□□ 0.46
CTCFP49711 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.92■□□□□ 0.46
CTCFP49711 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 AL691432.1-201ENST00000596308 1422 ntBASIC17.92■□□□□ 0.46
CTCFP49711 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CTCFP49711 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CTCFP49711 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 DDX39AP1-201ENST00000445147 1181 ntBASIC17.92■□□□□ 0.46
CTCFP49711 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.92■□□□□ 0.46
CTCFP49711 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CTCFP49711 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
CTCFP49711 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.92■□□□□ 0.46
CTCFP49711 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 FTLP5-201ENST00000586853 534 ntBASIC17.92■□□□□ 0.46
CTCFP49711 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTCFP49711 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.92■□□□□ 0.46
CTCFP49711 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
CTCFP49711 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.92■□□□□ 0.46
CTCFP49711 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms